Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_002549.1 Length=18959 Score E Sequences producing significant alignments: (Bits) Value seq96522 96.9 4e-16 >seq96522 Length=1638485 Score = 96.9 bits (106), Expect = 4e-16 Identities = 164/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 915 AGTTTCTCTCCTTTGCAAGTCTATTCCTTCCGAAATTGGTAGTAGGAGAAAAGGCTTGCC 974 ||||||| | |||| ||||| |||||||| || | || || || |||| ||| |||| Sbjct 689680 AGTTTCTTTTCTTTTGCAGTCTTTTCCTTCCCAANCTTGTGGTTGGGGAAAGGGCCTGCC 689739 Query 975 TTGAGAAGGTTCAAAGGCAAATTCAAGTACATGCAGAGCAAGGACTGATACAATATCCA- 1033 ||||||| || || ||||||||| | ||| |||||||| || | |||||| ||| Sbjct 689740 TTGAGAAAGTACAGAGGCAAATTGTGATCNGTGCGGAGCAAGGGCTCACACAATACCCAT 689799 Query 1034 ACAGCTTGGCAATCAGTAGGACACATGATGGTGATTTTCCGTTTGATGCGAACAAATTTT 1093 | ||| ||||| | |||| | ||||| |||| | | ||| || |||||| Sbjct 689800 AGAGC-TGGCAGACTCCAGGATATATGATAACTGTTTTGGGGATCATGAGAGTGAATTTT 689858 Query 1094 CTGATCAAATTTCTCCTAATACACCAAGGGATGCACATGGTTGCCGGGCATGATGC 1149 | |||||||| || || || |||||||| | | | || ||||| ||||| Sbjct 689859 ACATTTAAATTTCTACTTATTCATCAAGGGATCAATTTAGAGGCTGGGCACGATGC 689914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60466825291478