Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_002549.1
Length=18959
Score E
Sequences producing significant alignments: (Bits) Value
seq96522 96.9 4e-16
>seq96522
Length=1638485
Score = 96.9 bits (106), Expect = 4e-16
Identities = 164/236 (69%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 915 AGTTTCTCTCCTTTGCAAGTCTATTCCTTCCGAAATTGGTAGTAGGAGAAAAGGCTTGCC 974
||||||| | |||| ||||| |||||||| || | || || || |||| ||| ||||
Sbjct 689680 AGTTTCTTTTCTTTTGCAGTCTTTTCCTTCCCAANCTTGTGGTTGGGGAAAGGGCCTGCC 689739
Query 975 TTGAGAAGGTTCAAAGGCAAATTCAAGTACATGCAGAGCAAGGACTGATACAATATCCA- 1033
||||||| || || ||||||||| | ||| |||||||| || | |||||| |||
Sbjct 689740 TTGAGAAAGTACAGAGGCAAATTGTGATCNGTGCGGAGCAAGGGCTCACACAATACCCAT 689799
Query 1034 ACAGCTTGGCAATCAGTAGGACACATGATGGTGATTTTCCGTTTGATGCGAACAAATTTT 1093
| ||| ||||| | |||| | ||||| |||| | | ||| || ||||||
Sbjct 689800 AGAGC-TGGCAGACTCCAGGATATATGATAACTGTTTTGGGGATCATGAGAGTGAATTTT 689858
Query 1094 CTGATCAAATTTCTCCTAATACACCAAGGGATGCACATGGTTGCCGGGCATGATGC 1149
| |||||||| || || || |||||||| | | | || ||||| |||||
Sbjct 689859 ACATTTAAATTTCTACTTATTCATCAAGGGATCAATTTAGAGGCTGGGCACGATGC 689914
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 60466825291478
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |