Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_003678.1
Length=12602
Score E
Sequences producing significant alignments: (Bits) Value
seq66261 262 3e-66
seq116960 190 2e-44
seq44413 187 2e-43
seq36086 183 2e-42
seq87275 150 1e-32
>seq66261
Length=1077998
Score = 262 bits (290), Expect = 3e-66
Identities = 156/163 (96%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 841903 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATATTGTGCTGAGTGTAATAGG 841962
Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125
|||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 841963 CTGCATCCTGCTGAAGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTAGGCCTCAAGATC 842022
Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168
||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 842023 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGATATCACAG 842065
Score = 129 bits (142), Expect = 5e-26
Identities = 85/94 (90%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225
|||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |
Sbjct 842162 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCTCCAGATACTCACAGAGTTCCTTACC 842221
Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259
||||| |||||||||| ||| | || ||||||||
Sbjct 842222 ACATCTCATTTGGTTCTCGGGTTCCGGGTACCAG 842255
>seq116960
Length=1040990
Score = 190 bits (210), Expect = 2e-44
Identities = 196/254 (77%), Gaps = 3/254 (1%)
Strand=Plus/Minus
Query 4987 CCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATA 5046
|||||||| ||||| || | |||| ||| | | ||| | || ||||| ||| |||||
Sbjct 28912 CCGATGCCGAGGAAAACACAAGAGGGTTGCTACGAACCAGAAATCTAAG--TGCAAGATA 28855
Query 5047 CTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAG 5106
|| || | | |||||| ||||| | ||||| |||| |||||||||||||| ||||
Sbjct 28854 CTATGTGAAATATAATAG-CTGCAAGCCACTGAGAAAGGAAACTTTTGGGCAGAGGCAAG 28796
Query 5107 CATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCAC 5166
| ||||||||||||| | ||||||||| | || ||||||||||||| || |||||
Sbjct 28795 CCTGTTGGGCCTCAAGGTTACCTACTTTACATTGGTGGATGGAAAGGTCTACTGCATCAC 28736
Query 5167 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCA 5226
|| | |||||||| ||| | ||||||||||||| ||| ||| |||||| ||||||||
Sbjct 28735 AGCGAGGGCTGGACTCCACTGCGTGGGAATCTCCCTAGACTCCCTCAGAGTTCCTTATCA 28676
Query 5227 CATCCCATTTGGTT 5240
||| |||||||||
Sbjct 28675 CATTTCATTTGGTT 28662
>seq44413
Length=628612
Score = 187 bits (206), Expect = 2e-43
Identities = 220/293 (75%), Gaps = 9/293 (3%)
Strand=Plus/Plus
Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAG----GTTT 5014
|||| ||| |||| || |||||| | | | ||||||| |||| | || || | ||
Sbjct 310327 AAGAATCAGTGAACACTATGATGGGTAGCTGATGCCAAAGAAAACCTAACAGACAGGCTT 310386
Query 5015 GAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCT 5074
| || ||| | | |||| |||||| ||| | ||||||||| |||||||| | | ||
Sbjct 310387 GGAACAGACTGAGGACCTCAGAGTGTG-GATGCCATGCTGAGTGCAATAGGCTACCTTCT 310445
Query 5075 GCTGAGGAAGGTGACTTTTGGGCAGAGTCAA-GCATGTTGGGCCTCAAAATCACCTACTT 5133
||| |||| || ||| | ||||||| |||| ||| | || |||||| |||| | |||
Sbjct 310446 GCTCAGGACGGAGACCTA-GGGCAGAATCAAAGCACGCTGAACCTCAAGATCATGTGCTT 310504
Query 5134 TGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGG 5193
|| | ||||||||||||| ||||| || | || |||||||||||||||||||||||
Sbjct 310505 GGCATGGGTGGATGGAAAGGTCTATGACATAATGGANTGGGCTGGATGCCAGCGTGTGGG 310564
Query 5194 AATCTCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGA 5246
|||||||| || | || ||||| || ||||||||| |||||||||||| ||
Sbjct 310565 AATCTCCCAAGTTGCC--CAGAGCTCCATATCACATCTCATTTGGTTCACAGA 310615
>seq36086
Length=27116
Score = 183 bits (202), Expect = 2e-42
Identities = 220/295 (75%), Gaps = 13/295 (4%)
Strand=Plus/Minus
Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024
|||||| | | ||||||||| | ||||| || ||| |||||| ||||| || ||||
Sbjct 26320 CAATGAGTCCTGTGATGTGCAGCTAATGCCTAGGGAAGTGTAGGAGATTTGAGATAGACC 26261
Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084
||| ||||||||| ||||| ||||| ||| |||||||||| | | ||||||||| |||
Sbjct 26260 AGGAGCCTAAGAGTTCCAGACACTGTACTG-GTGTAATAGGTTACCCCCTGCTGAGAAAG 26202
Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144
| |||| |||||| |||||||| |||||||| |||| || ||| |||
Sbjct 26201 GAGACTCA--GGCAGATCCAAGCATGGCAGGCCTCAAGATCA--------GCACTGGTGG 26152
Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204
|||| ||| | ||||| |||||||||||||||||| |||| |||||| |||| | |
Sbjct 26151 ATGGGAAGAT-TATGACGTCACAGAGTGGGCTGGATCGCAGCATGTGGGCATCT-TCTGG 26094
Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259
|||||||||| | | || ||| | || |||| || || | |||||||||||
Sbjct 26093 ATACCCACAGGATTCTGTACAACAGCTCAGTTGGCTCTTGGGTACCAGGTACCAG 26039
>seq87275
Length=228649
Score = 150 bits (166), Expect = 1e-32
Identities = 204/279 (73%), Gaps = 19/279 (7%)
Strand=Plus/Minus
Query 4997 GGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAG 5056
||||||| | |||| |||| ||| ||| || || ||||||||| | ||||||| ||
Sbjct 16395 GGAAAGCTTCAGAGGCTTGAGATGCACCAGGCACTTAAGAGTGCTGGGCACTGTGCCAAG 16336
Query 5057 TGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGC 5116
||| ||| ||| |||||||||||||| || ||| || | ||| ||||||| || ||
Sbjct 16335 AGTATTAGATGGCACCCTGCTGAGGAAGGAGA--TTTTGGAATAGTAAAGCATGCTGAGC 16278
Query 5117 CTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCT 5176
|| | ||||| | |||||| |||| ||||| ||||| || ||||| |||
Sbjct 16277 CT--------CTTACTTAGTACTGATGAATGGCAAGGTCTATGACAT--CAGAGAGGGAC 16228
Query 5177 GGATGCCAGCGTGTGGGAATCT--CCCCAGATACCCACAGAGTCCCTTATCACATCCCAT 5234
||||||||| | |||||| ||||||||||| ||| || || |||||||| |||
Sbjct 16227 AGATGCCAGC--ATAAGAATCTCCCCCCAGATACC--CAGGGTTCCATATCACATGACAT 16172
Query 5235 TTGGTTCACGGATGCCAGGTACCAGCGACCAG-AGAGAG 5272
||||||| || | |||||| |||| | ||| ||||||
Sbjct 16171 TTGGTTCTGGGTTACCAGGTGCCAGTGGTCAGAAGAGAG 16133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40157198519752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |