Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_004161.1 Length=18891 Score E Sequences producing significant alignments: (Bits) Value seq96522 89.7 6e-14 >seq96522 Length=1638485 Score = 89.7 bits (98), Expect = 6e-14 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 1337 GAATATGCCCCTTTTGCTCGCCTTCTCAATCTCTCGGGAGTTAACAACCTAGAACATGGT 1396 |||||||| || |||||||| | || || | || || || || ||| ||| |||||| Sbjct 690095 GAATATGCACCATTTGCTCGGATACTAAACTTGTCAGGGGTAAATAACTTAGGACATGGA 690154 Query 1397 CTCTACCCACAGTTATCAGCAATTGCTCTTGGAGTTGCCACAGCACATGGTAGCACCCTT 1456 | | | ||||| || |||||||| | ||||| || |||||| ||| || || | Sbjct 690155 TTATTTCTGCAGTTGTCTGCAATTGCCCAGGGAGTAGCAACAGCATGTGGAAGAACATTG 690214 Query 1457 GCAGGAGTTAATGTTGGTGAGCAGTATCAGCAGCTTAGAGAGGCTGCCACTGAAGCTGA 1515 ||||| | | | ||||||||||| ||||| || |||| | || | ||||||||| Sbjct 690215 GCAGGTATCACAGAGGGTGAGCAGTACCAGCAACTATGAGAAGTAGCTAGTGAAGCTGA 690273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60249525633946