Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_006432.1
Length=18875
Score E
Sequences producing significant alignments: (Bits) Value
seq96522 93.3 5e-15
>seq96522
Length=1638485
Score = 93.3 bits (102), Expect = 5e-15
Identities = 393/617 (64%), Gaps = 31/617 (5%)
Strand=Plus/Plus
Query 903 AGTTTTTATCCTTTGCCAGTTTGTTTCTACCCAAACTTGTCGTTGGGGAGAAAGCGTGTC 962
||||| | | |||| |||| | || || ||||| ||||| |||||||| | || || |
Sbjct 689680 AGTTTCTTTTCTTTTGCAGTCTTTTCCTTCCCAANCTTGTGGTTGGGGAAAGGGCCTGCC 689739
Query 963 TGGAAAAAGTACAAAGGCAGATTCAGGTCCATGCAGAACAAGGGCTCATTCAATATCCAA 1022
| || |||||||| ||||| ||| | || ||| || |||||||||| ||||| |||
Sbjct 689740 TTGAGAAAGTACAGAGGCAAATTGTGATCNGTGCGGAGCAAGGGCTCACACAATACCCAT 689799
Query 1023 CTTCCTGGCAATCAGTTGGACACATGATGGTGATCTTCCGTTTGATGAGAACAAACTTTT 1082
|||||| | ||| | ||||| | || | | |||||| || |||
Sbjct 689800 AGAGCTGGCAGACTCCAGGATATATGATAACTGTTTTGGGGATCATGAGAGTGAATTTTA 689859
Query 1083 TAATCAAGTTCCTACTAATACATCAGGGGATGCACATGGTCGCAGGCCATGATGCGAATG 1142
| | || || ||||| || ||||| ||||| | | | || || || ||||| |||
Sbjct 689860 CATTTAAATTTCTACTTATTCATCAAGGGATCAATTTAGAGGCTGGGCACGATGCTGATG 689919
Query 1143 ACACAGTAATATCTAATTCTGTTGCCCAAGCAAGGTTCTCTGGTCTTCTGATTGTAAAGA 1202
||| | || | || |||| ||||| || || ||||| | || |
Sbjct 689920 ACATTATTATGACAAACACTGT-------------TTCTCAGGGCTCTTGATTCTTAAAA 689966
Query 1203 CTGTTCTGGACCACATCCTACAAAAAACAGATCTTGGAGTAC----GACTTCATCCACTG 1258
||||| | ||||| ||||| || | ||| |||| || |||||| || ||
Sbjct 689967 CTGTTTTAGACCATATCCT-CAGTA---AGAAAGTGGATCACATCTTACTTCACCCTCTA 690022
Query 1259 GCCAGGACAGCAAAAGTCAAGAATGAG-GTCAGTTCATTCAAGGC-AGCTCT---TGGCT 1313
| ||| |||||||| | |||| | || | || |||| ||||| || |
Sbjct 690023 GTTCCGACTGCAAAAGTNAGAGCTGAGCTTGAGGGCTTT--AGGCTTGCTCTGAAAGGTT 690080
Query 1314 CACTTGCCAAGCATGGAGAATATGCTCCATTTGCACGTCTCCTCAATCTTTCTGGAGTCA 1373
| | | | | |||||||| |||||||| || | || || | || || || |
Sbjct 690081 ---TGGTTCACCCCCGTGAATATGCACCATTTGCTCGGATACTAAACTTGTCAGGGGTAA 690137
Query 1374 ACAACTTGGAACATGGGCTTTATCCACAACTCTCAGCCATTGCTTTGGGTGTTGCAACTG 1433
| ||||| | |||||| | | || || | || || ||||| ||| || ||||| |
Sbjct 690138 ATAACTTAGGACATGGATTATTTCTGCAGTTGTCTGCAATTGCCCAGGGAGTAGCAACAG 690197
Query 1434 CCCACGGGAGCACGCTGGCTGGTGTTAATGTAGGGGAGCAATATCAGCAACTGCGTGAGG 1493
| || || || |||| ||| | | | || ||||| || |||||||| | || |
Sbjct 690198 CATGTGGAAGAACATTGGCAGGTATCACAGAGGGTGAGCAGTACCAGCAACTATGAGAAG 690257
Query 1494 CTGCTACTGAAGCTGAA 1510
|||| ||||||||||
Sbjct 690258 TAGCTAGTGAAGCTGAA 690274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 60198396302762
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |