Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_006432.1 Length=18875 Score E Sequences producing significant alignments: (Bits) Value seq96522 93.3 5e-15 >seq96522 Length=1638485 Score = 93.3 bits (102), Expect = 5e-15 Identities = 393/617 (64%), Gaps = 31/617 (5%) Strand=Plus/Plus Query 903 AGTTTTTATCCTTTGCCAGTTTGTTTCTACCCAAACTTGTCGTTGGGGAGAAAGCGTGTC 962 ||||| | | |||| |||| | || || ||||| ||||| |||||||| | || || | Sbjct 689680 AGTTTCTTTTCTTTTGCAGTCTTTTCCTTCCCAANCTTGTGGTTGGGGAAAGGGCCTGCC 689739 Query 963 TGGAAAAAGTACAAAGGCAGATTCAGGTCCATGCAGAACAAGGGCTCATTCAATATCCAA 1022 | || |||||||| ||||| ||| | || ||| || |||||||||| ||||| ||| Sbjct 689740 TTGAGAAAGTACAGAGGCAAATTGTGATCNGTGCGGAGCAAGGGCTCACACAATACCCAT 689799 Query 1023 CTTCCTGGCAATCAGTTGGACACATGATGGTGATCTTCCGTTTGATGAGAACAAACTTTT 1082 |||||| | ||| | ||||| | || | | |||||| || ||| Sbjct 689800 AGAGCTGGCAGACTCCAGGATATATGATAACTGTTTTGGGGATCATGAGAGTGAATTTTA 689859 Query 1083 TAATCAAGTTCCTACTAATACATCAGGGGATGCACATGGTCGCAGGCCATGATGCGAATG 1142 | | || || ||||| || ||||| ||||| | | | || || || ||||| ||| Sbjct 689860 CATTTAAATTTCTACTTATTCATCAAGGGATCAATTTAGAGGCTGGGCACGATGCTGATG 689919 Query 1143 ACACAGTAATATCTAATTCTGTTGCCCAAGCAAGGTTCTCTGGTCTTCTGATTGTAAAGA 1202 ||| | || | || |||| ||||| || || ||||| | || | Sbjct 689920 ACATTATTATGACAAACACTGT-------------TTCTCAGGGCTCTTGATTCTTAAAA 689966 Query 1203 CTGTTCTGGACCACATCCTACAAAAAACAGATCTTGGAGTAC----GACTTCATCCACTG 1258 ||||| | ||||| ||||| || | ||| |||| || |||||| || || Sbjct 689967 CTGTTTTAGACCATATCCT-CAGTA---AGAAAGTGGATCACATCTTACTTCACCCTCTA 690022 Query 1259 GCCAGGACAGCAAAAGTCAAGAATGAG-GTCAGTTCATTCAAGGC-AGCTCT---TGGCT 1313 | ||| |||||||| | |||| | || | || |||| ||||| || | Sbjct 690023 GTTCCGACTGCAAAAGTNAGAGCTGAGCTTGAGGGCTTT--AGGCTTGCTCTGAAAGGTT 690080 Query 1314 CACTTGCCAAGCATGGAGAATATGCTCCATTTGCACGTCTCCTCAATCTTTCTGGAGTCA 1373 | | | | | |||||||| |||||||| || | || || | || || || | Sbjct 690081 ---TGGTTCACCCCCGTGAATATGCACCATTTGCTCGGATACTAAACTTGTCAGGGGTAA 690137 Query 1374 ACAACTTGGAACATGGGCTTTATCCACAACTCTCAGCCATTGCTTTGGGTGTTGCAACTG 1433 | ||||| | |||||| | | || || | || || ||||| ||| || ||||| | Sbjct 690138 ATAACTTAGGACATGGATTATTTCTGCAGTTGTCTGCAATTGCCCAGGGAGTAGCAACAG 690197 Query 1434 CCCACGGGAGCACGCTGGCTGGTGTTAATGTAGGGGAGCAATATCAGCAACTGCGTGAGG 1493 | || || || |||| ||| | | | || ||||| || |||||||| | || | Sbjct 690198 CATGTGGAAGAACATTGGCAGGTATCACAGAGGGTGAGCAGTACCAGCAACTATGAGAAG 690257 Query 1494 CTGCTACTGAAGCTGAA 1510 |||| |||||||||| Sbjct 690258 TAGCTAGTGAAGCTGAA 690274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60198396302762