Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_014372.1
Length=18935
Score E
Sequences producing significant alignments: (Bits) Value
seq96522 107 2e-19
>seq96522
Length=1638485
Score = 107 bits (118), Expect = 2e-19
Identities = 393/611 (64%), Gaps = 24/611 (4%)
Strand=Plus/Plus
Query 911 TTCCTCTCTTTTGCTAGCTTATTTCTTCCTAAGCTAGTTGTCGGAGAAAAAGCCTGTCTA 970
||| | |||||||| ||| || ||||| || || || || || |||| ||||| ||
Sbjct 689683 TTCTTTTCTTTTGCAGTCTT-TTCCTTCCCAANCTTGTGGTTGGGGAAAGGGCCTGCCTT 689741
Query 971 GAAAAGGTGCAGCGGCAAATTCAAGTTCATTCTGAGCAGGGATTGATCCAATACCCC-AC 1029
|| || || ||| |||||||| | | | ||||| || | | |||||||| |
Sbjct 689742 GAGAAAGTACAGAGGCAAATTGTGATCNGTGCGGAGCAAGGGCTCACACAATACCCATAG 689801
Query 1030 AGCCTGGCAGTCAGTTGGACACATGATGGTCATTTTCAGACTGATGAGAACAAATTTTCT 1089
||| |||||| | ||| | ||||| |||| | | |||||| ||||||
Sbjct 689802 AGC-TGGCAGACTCCAGGATATATGATAACTGTTTTGGGGATCATGAGAGTGAATTTTAC 689860
Query 1090 AATTAAGTTCCTCCTTATACATCAAGGGATGCATATGGTAGCAGGACACGATGCTAACGA 1149
| |||| || || ||||| ||||||||||| || | | || || ||||||||| | ||
Sbjct 689861 ATTTAAATTTCTACTTATTCATCAAGGGATCAATTTAGAGGCTGGGCACGATGCTGATGA 689920
Query 1150 TGCTGTCATCGCAAACTCTGTAGCTCAAGCACGTTTTTCAGGATTATTGATCGTTAAAAC 1209
| | || ||||| |||| || ||||| | ||||| |||||||
Sbjct 689921 CATTATTATGACAAACACTGT-------------TTCTCAGGGCTCTTGATTCTTAAAAC 689967
Query 1210 AGTGCTAGATCACATCCT---TCAGAAAACAGAGCACGGAGTGCGTCTTCATCCTTTGGC 1266
|| |||| || ||||| | ||||| || ||| | | |||| ||| | |
Sbjct 689968 TGTTTTAGACCATATCCTCAGTAAGAAAGTGGATCACATCTTAC---TTCACCCTCTAGT 690024
Query 1267 AAGAACTGCTAAGGTCAAGAACGAAG-TAAATTCCTTTAAGGCTGCCCTTAGCTCGCTAG 1325
||||| || || | || | || | | ||||| | ||| || | | |
Sbjct 690025 TCCGACTGCAAAAGTNA-GAGCTGAGCTTGAGGGCTTTAGGCTTGCTCTGAAAGGTTTGG 690083
Query 1326 CACAACATGGAGAGTATGCTCCTTTTGCTCGCTTGCTGAATCTTTCTGGAGTCAACAATC 1385
|| | | || ||||| || |||||||| | || || | || || || || ||
Sbjct 690084 TTCACCCCCGTGAATATGCACCATTTGCTCGGATACTAAACTTGTCAGGGGTAAATAACT 690143
Query 1386 TCGAGCACGGACTGTTTCCTCAGCTTTCTGCAATTGCCCTAGGTGTCGCAACGGCACACG 1445
| | || ||| | |||| ||| | ||||||||||||| || || ||||| ||| |
Sbjct 690144 TAGGACATGGATTATTTCTGCAGTTGTCTGCAATTGCCCAGGGAGTAGCAACAGCATGTG 690203
Query 1446 GCAGTACCCTGGCAGGAGTAAATGTGGGGGAACAGTATCAGCAACTACGAGAAGCAGCCA 1505
| || || ||||||| | | | ||| || ||||| ||||||||| |||||| ||| |
Sbjct 690204 GAAGAACATTGGCAGGTATCACAGAGGGTGAGCAGTACCAGCAACTATGAGAAGTAGCTA 690263
Query 1506 CTGAGGCAGAA 1516
||| || |||
Sbjct 690264 GTGAAGCTGAA 690274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 60390131294702
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |