Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_014372.1 Length=18935 Score E Sequences producing significant alignments: (Bits) Value seq96522 107 2e-19 >seq96522 Length=1638485 Score = 107 bits (118), Expect = 2e-19 Identities = 393/611 (64%), Gaps = 24/611 (4%) Strand=Plus/Plus Query 911 TTCCTCTCTTTTGCTAGCTTATTTCTTCCTAAGCTAGTTGTCGGAGAAAAAGCCTGTCTA 970 ||| | |||||||| ||| || ||||| || || || || || |||| ||||| || Sbjct 689683 TTCTTTTCTTTTGCAGTCTT-TTCCTTCCCAANCTTGTGGTTGGGGAAAGGGCCTGCCTT 689741 Query 971 GAAAAGGTGCAGCGGCAAATTCAAGTTCATTCTGAGCAGGGATTGATCCAATACCCC-AC 1029 || || || ||| |||||||| | | | ||||| || | | |||||||| | Sbjct 689742 GAGAAAGTACAGAGGCAAATTGTGATCNGTGCGGAGCAAGGGCTCACACAATACCCATAG 689801 Query 1030 AGCCTGGCAGTCAGTTGGACACATGATGGTCATTTTCAGACTGATGAGAACAAATTTTCT 1089 ||| |||||| | ||| | ||||| |||| | | |||||| |||||| Sbjct 689802 AGC-TGGCAGACTCCAGGATATATGATAACTGTTTTGGGGATCATGAGAGTGAATTTTAC 689860 Query 1090 AATTAAGTTCCTCCTTATACATCAAGGGATGCATATGGTAGCAGGACACGATGCTAACGA 1149 | |||| || || ||||| ||||||||||| || | | || || ||||||||| | || Sbjct 689861 ATTTAAATTTCTACTTATTCATCAAGGGATCAATTTAGAGGCTGGGCACGATGCTGATGA 689920 Query 1150 TGCTGTCATCGCAAACTCTGTAGCTCAAGCACGTTTTTCAGGATTATTGATCGTTAAAAC 1209 | | || ||||| |||| || ||||| | ||||| ||||||| Sbjct 689921 CATTATTATGACAAACACTGT-------------TTCTCAGGGCTCTTGATTCTTAAAAC 689967 Query 1210 AGTGCTAGATCACATCCT---TCAGAAAACAGAGCACGGAGTGCGTCTTCATCCTTTGGC 1266 || |||| || ||||| | ||||| || ||| | | |||| ||| | | Sbjct 689968 TGTTTTAGACCATATCCTCAGTAAGAAAGTGGATCACATCTTAC---TTCACCCTCTAGT 690024 Query 1267 AAGAACTGCTAAGGTCAAGAACGAAG-TAAATTCCTTTAAGGCTGCCCTTAGCTCGCTAG 1325 ||||| || || | || | || | | ||||| | ||| || | | | Sbjct 690025 TCCGACTGCAAAAGTNA-GAGCTGAGCTTGAGGGCTTTAGGCTTGCTCTGAAAGGTTTGG 690083 Query 1326 CACAACATGGAGAGTATGCTCCTTTTGCTCGCTTGCTGAATCTTTCTGGAGTCAACAATC 1385 || | | || ||||| || |||||||| | || || | || || || || || Sbjct 690084 TTCACCCCCGTGAATATGCACCATTTGCTCGGATACTAAACTTGTCAGGGGTAAATAACT 690143 Query 1386 TCGAGCACGGACTGTTTCCTCAGCTTTCTGCAATTGCCCTAGGTGTCGCAACGGCACACG 1445 | | || ||| | |||| ||| | ||||||||||||| || || ||||| ||| | Sbjct 690144 TAGGACATGGATTATTTCTGCAGTTGTCTGCAATTGCCCAGGGAGTAGCAACAGCATGTG 690203 Query 1446 GCAGTACCCTGGCAGGAGTAAATGTGGGGGAACAGTATCAGCAACTACGAGAAGCAGCCA 1505 | || || ||||||| | | | ||| || ||||| ||||||||| |||||| ||| | Sbjct 690204 GAAGAACATTGGCAGGTATCACAGAGGGTGAGCAGTACCAGCAACTATGAGAAGTAGCTA 690263 Query 1506 CTGAGGCAGAA 1516 ||| || ||| Sbjct 690264 GTGAAGCTGAA 690274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60390131294702