Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_014373.1 Length=18940 Score E Sequences producing significant alignments: (Bits) Value seq96522 91.5 2e-14 >seq96522 Length=1638485 Score = 91.5 bits (100), Expect = 2e-14 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 1331 GAATATGCCCCGTTTGCTCGTCTGCTGAATCTATCTGGGGTTAATAATCTTGAGCATGGG 1390 |||||||| || |||||||| | || || | || ||||| ||||| | | ||||| Sbjct 690095 GAATATGCACCATTTGCTCGGATACTAAACTTGTCAGGGGTAAATAACTTAGGACATGGA 690154 Query 1391 CTTTTCCCTCAACTTTCTGCAATTGCTTTGGGAGTAGCAACTGCACATGGGAGCACTCTG 1450 | || | || | ||||||||||| |||||||||||| ||| ||| || || || Sbjct 690155 TTATTTCTGCAGTTGTCTGCAATTGCCCAGGGAGTAGCAACAGCATGTGGAAGAACATTG 690214 Query 1451 GCTGGAGTCAATGTAGGAGAGCAATACCAACAACTGCGAGAAGCAGCCACTGAGGCCGAA 1510 || || ||| | || ||||| ||||| ||||| |||||| ||| | ||| || ||| Sbjct 690215 GCAGGTATCACAGAGGGTGAGCAGTACCAGCAACTATGAGAAGTAGCTAGTGAAGCTGAA 690274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60406109210697