Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_016144.1
Length=18927
Score E
Sequences producing significant alignments: (Bits) Value
seq96522 107 2e-19
>seq96522
Length=1638485
Score = 107 bits (118), Expect = 2e-19
Identities = 400/618 (65%), Gaps = 25/618 (4%)
Strand=Plus/Plus
Query 920 TGGGATGTTT-TTGTCTTTCGCAAGTTTATTTCTCCCGAAGTTAGTTGTCGGTGAACGTG 978
|||| |||| || ||||| ||| || | || || || || | || || || ||| | |
Sbjct 689675 TGGGTAGTTTCTTTTCTTTTGCA-GTCTTTTCCTTCCCAANCTTGTGGTTGGGGAAAGGG 689733
Query 979 CCTGCTTGGAAAAAGTGCAGCGGCAAATTCAAATTCATGCAGAACAAGGCTTAATCCAAT 1038
||||| | || ||||| ||| |||||||| || ||| || ||||| | | ||||
Sbjct 689734 CCTGCCTTGAGAAAGTACAGAGGCAAATTGTGATCNGTGCGGAGCAAGGGCTCACACAAT 689793
Query 1039 ATCCCACCCAA-TGGCAGTCCGTAGGACATATGATGGTTGTATTCAGGCTGATTCGTGTC 1097
| |||| | |||||| | |||| ||||||| ||| || || | || | ||
Sbjct 689794 A-CCCATAGAGCTGGCAGACTCCAGGATATATGATAACTGTTTTGGGGATCATGAGAGTG 689852
Query 1098 AACTTTGTCCTCAAATTCCTCCTAGTTCACCAGGGCATGCACATGATGGCTGGGCATGAT 1157
|| ||| | ||||| || || |||| || || || | | ||||||||| |||
Sbjct 689853 AATTTTACATTTAAATTTCTACTTATTCATCAAGGGATCAATTTAGAGGCTGGGCACGAT 689912
Query 1158 GCTAATGATGCAATCATTGCCAATTCAATATCCCAAACACGATTT-TCAGGATTGTTAAT 1216
||| |||| |||| | ||| ||||||| ||| ||||| | || ||
Sbjct 689913 GCTGATGA------CATT--------ATTATGACAAACACTGTTTCTCAGGGCTCTTGAT 689958
Query 1217 CGTGAAGACTGTCCTAGAGCATATTCTCC--AAAAAACTGAGGCAGGGGTCCAACTTCAT 1274
| || ||||| |||| ||||| ||| || ||| || || || ||||||
Sbjct 689959 TCTTAAAACTGTTTTAGACCATATCCTCAGTAAGAAAGTGGATCACA--TCTTACTTCAC 690016
Query 1275 CCATTAGCTCGAACCTCGAAAGTCAAAGGAGAACTCCTTGCATTCAAATCAGCACTGGAA 1334
|| ||| || || | ||||| | || || || | || | || ||| ||
Sbjct 690017 CCTCTAGTTCCGACTGCAAAAGTNAGAGCTGAGCTTGAGGGCTTTAGGCTTGCTCTGAAA 690076
Query 1335 GCGTTGGCCTCACACA-GAGAGTATGCACCATTTGCACGGCTCTTGAACCTCTCTGGTGT 1393
| |||| |||| | | || |||||||||||||| ||| | | ||| | || || ||
Sbjct 690077 GGTTTGGT-TCACCCCCGTGAATATGCACCATTTGCTCGGATACTAAACTTGTCAGGGGT 690135
Query 1394 TAATAATCTAGAACATGGCCTGTATCCTCAGCTCTCTGCCATCGCGCTTGGAGTTGCTAC 1453
||||| ||| |||||| | | || ||| | ||||| || || | ||||| || ||
Sbjct 690136 AAATAACTTAGGACATGGATTATTTCTGCAGTTGTCTGCAATTGCCCAGGGAGTAGCAAC 690195
Query 1454 AGCTCATGGTAGCACACTAGCAGGAGTTAATGTGAGTGAACAATACCAGCAACTCCGAGA 1513
||| ||| || ||| | ||||| | | | | |||| || ||||||||||| ||||
Sbjct 690196 AGCATGTGGAAGAACATTGGCAGGTATCACAGAGGGTGAGCAGTACCAGCAACTATGAGA 690255
Query 1514 GGCTGCAACAGAGGCTGA 1531
| || | || |||||
Sbjct 690256 AGTAGCTAGTGAAGCTGA 690273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 60364566629110
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |