Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_016144.1 Length=18927 Score E Sequences producing significant alignments: (Bits) Value seq96522 107 2e-19 >seq96522 Length=1638485 Score = 107 bits (118), Expect = 2e-19 Identities = 400/618 (65%), Gaps = 25/618 (4%) Strand=Plus/Plus Query 920 TGGGATGTTT-TTGTCTTTCGCAAGTTTATTTCTCCCGAAGTTAGTTGTCGGTGAACGTG 978 |||| |||| || ||||| ||| || | || || || || | || || || ||| | | Sbjct 689675 TGGGTAGTTTCTTTTCTTTTGCA-GTCTTTTCCTTCCCAANCTTGTGGTTGGGGAAAGGG 689733 Query 979 CCTGCTTGGAAAAAGTGCAGCGGCAAATTCAAATTCATGCAGAACAAGGCTTAATCCAAT 1038 ||||| | || ||||| ||| |||||||| || ||| || ||||| | | |||| Sbjct 689734 CCTGCCTTGAGAAAGTACAGAGGCAAATTGTGATCNGTGCGGAGCAAGGGCTCACACAAT 689793 Query 1039 ATCCCACCCAA-TGGCAGTCCGTAGGACATATGATGGTTGTATTCAGGCTGATTCGTGTC 1097 | |||| | |||||| | |||| ||||||| ||| || || | || | || Sbjct 689794 A-CCCATAGAGCTGGCAGACTCCAGGATATATGATAACTGTTTTGGGGATCATGAGAGTG 689852 Query 1098 AACTTTGTCCTCAAATTCCTCCTAGTTCACCAGGGCATGCACATGATGGCTGGGCATGAT 1157 || ||| | ||||| || || |||| || || || | | ||||||||| ||| Sbjct 689853 AATTTTACATTTAAATTTCTACTTATTCATCAAGGGATCAATTTAGAGGCTGGGCACGAT 689912 Query 1158 GCTAATGATGCAATCATTGCCAATTCAATATCCCAAACACGATTT-TCAGGATTGTTAAT 1216 ||| |||| |||| | ||| ||||||| ||| ||||| | || || Sbjct 689913 GCTGATGA------CATT--------ATTATGACAAACACTGTTTCTCAGGGCTCTTGAT 689958 Query 1217 CGTGAAGACTGTCCTAGAGCATATTCTCC--AAAAAACTGAGGCAGGGGTCCAACTTCAT 1274 | || ||||| |||| ||||| ||| || ||| || || || |||||| Sbjct 689959 TCTTAAAACTGTTTTAGACCATATCCTCAGTAAGAAAGTGGATCACA--TCTTACTTCAC 690016 Query 1275 CCATTAGCTCGAACCTCGAAAGTCAAAGGAGAACTCCTTGCATTCAAATCAGCACTGGAA 1334 || ||| || || | ||||| | || || || | || | || ||| || Sbjct 690017 CCTCTAGTTCCGACTGCAAAAGTNAGAGCTGAGCTTGAGGGCTTTAGGCTTGCTCTGAAA 690076 Query 1335 GCGTTGGCCTCACACA-GAGAGTATGCACCATTTGCACGGCTCTTGAACCTCTCTGGTGT 1393 | |||| |||| | | || |||||||||||||| ||| | | ||| | || || || Sbjct 690077 GGTTTGGT-TCACCCCCGTGAATATGCACCATTTGCTCGGATACTAAACTTGTCAGGGGT 690135 Query 1394 TAATAATCTAGAACATGGCCTGTATCCTCAGCTCTCTGCCATCGCGCTTGGAGTTGCTAC 1453 ||||| ||| |||||| | | || ||| | ||||| || || | ||||| || || Sbjct 690136 AAATAACTTAGGACATGGATTATTTCTGCAGTTGTCTGCAATTGCCCAGGGAGTAGCAAC 690195 Query 1454 AGCTCATGGTAGCACACTAGCAGGAGTTAATGTGAGTGAACAATACCAGCAACTCCGAGA 1513 ||| ||| || ||| | ||||| | | | | |||| || ||||||||||| |||| Sbjct 690196 AGCATGTGGAAGAACATTGGCAGGTATCACAGAGGGTGAGCAGTACCAGCAACTATGAGA 690255 Query 1514 GGCTGCAACAGAGGCTGA 1531 | || | || ||||| Sbjct 690256 AGTAGCTAGTGAAGCTGA 690273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60364566629110