Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq75688 95.1 7e-17 seq118044 89.7 3e-15 seq17346 86.0 4e-14 seq27452 84.2 1e-13 seq118499 77.0 2e-11 >seq75688 Length=7763 Score = 95.1 bits (104), Expect = 7e-17 Identities = 63/69 (91%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| Sbjct 3847 CTGCCCAGGCATAGTTCACCATCTTTTGGGTCCTAATGCAT-TGCTCGTGCTCCACCTCC 3905 Query 897 CCGACGCGG 905 ||| || || Sbjct 3906 CCGGCGGGG 3914 >seq118044 Length=32052 Score = 89.7 bits (98), Expect = 3e-15 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTC 895 ||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||| Sbjct 12061 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCGAGCGCTTGTGCCCCACCTC 12119 >seq17346 Length=453640 Score = 86.0 bits (94), Expect = 4e-14 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||| ||||||||| ||| |||||||| |||||| || ||||||||||||| Sbjct 218947 CTGCCCAGGCATAATTCACCATCCTTCAGGTCCTAATGCATGCACTTGTGCTCCACCTCC 219006 Query 897 CC 898 || Sbjct 219007 CC 219008 >seq27452 Length=344656 Score = 84.2 bits (92), Expect = 1e-13 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||| ||||||| | || || | ||||||||||||||| Sbjct 334960 CTGCCCAGGCATAGTTCACCATCTTTTGGGTCCTCATGCGTGTGTTCGTGCTCCACCTCC 335019 Query 897 C 897 | Sbjct 335020 C 335020 >seq118499 Length=19788 Score = 77.0 bits (84), Expect = 2e-11 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||| ||||||||||||||||| |||||||| | || |||| |||||||||||| Sbjct 10355 CTGCCCAGACATAGTTCACCATCTTTTAGGTCCTAATGTGTGTGCTCCTGCTCCACCTCC 10296 Query 897 CC 898 || Sbjct 10295 CC 10294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2857278257754