Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_018464.1
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
seq75688 95.1 7e-17
seq118044 89.7 3e-15
seq17346 86.0 4e-14
seq27452 84.2 1e-13
seq118499 77.0 2e-11
>seq75688
Length=7763
Score = 95.1 bits (104), Expect = 7e-17
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
|||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||
Sbjct 3847 CTGCCCAGGCATAGTTCACCATCTTTTGGGTCCTAATGCAT-TGCTCGTGCTCCACCTCC 3905
Query 897 CCGACGCGG 905
||| || ||
Sbjct 3906 CCGGCGGGG 3914
>seq118044
Length=32052
Score = 89.7 bits (98), Expect = 3e-15
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTC 895
||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||
Sbjct 12061 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCGAGCGCTTGTGCCCCACCTC 12119
>seq17346
Length=453640
Score = 86.0 bits (94), Expect = 4e-14
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
||||||||||||| ||||||||| ||| |||||||| |||||| || |||||||||||||
Sbjct 218947 CTGCCCAGGCATAATTCACCATCCTTCAGGTCCTAATGCATGCACTTGTGCTCCACCTCC 219006
Query 897 CC 898
||
Sbjct 219007 CC 219008
>seq27452
Length=344656
Score = 84.2 bits (92), Expect = 1e-13
Identities = 55/61 (90%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
|||||||||||||||||||||||||| ||||||| | || || | |||||||||||||||
Sbjct 334960 CTGCCCAGGCATAGTTCACCATCTTTTGGGTCCTCATGCGTGTGTTCGTGCTCCACCTCC 335019
Query 897 C 897
|
Sbjct 335020 C 335020
>seq118499
Length=19788
Score = 77.0 bits (84), Expect = 2e-11
Identities = 54/62 (87%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
|||||||| ||||||||||||||||| |||||||| | || |||| ||||||||||||
Sbjct 10355 CTGCCCAGACATAGTTCACCATCTTTTAGGTCCTAATGTGTGTGCTCCTGCTCCACCTCC 10296
Query 897 CC 898
||
Sbjct 10295 CC 10294
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2857278257754
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |