Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_024781.1 Length=19114 Score E Sequences producing significant alignments: (Bits) Value seq96522 95.1 1e-15 >seq96522 Length=1638485 Score = 95.1 bits (104), Expect = 1e-15 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 923 GAGTACGCACCATTTGCACGGGTTTTGAATTTATCAGGGATCAATAACCTTGAGCATGGG 982 || || ||||||||||| ||| | | || || |||||| | |||||| | | ||||| Sbjct 690095 GAATATGCACCATTTGCTCGGATACTAAACTTGTCAGGGGTAAATAACTTAGGACATGGA 690154 Query 983 CTCTATCCTCAGCTTTCAGCAATTGCACTGGGCGTTGCAACAGCACATGGCAGTACATTG 1042 | | || ||| | || |||||||| | ||| || ||||||||| ||| || |||||| Sbjct 690155 TTATTTCTGCAGTTGTCTGCAATTGCCCAGGGAGTAGCAACAGCATGTGGAAGAACATTG 690214 Query 1043 GCTGGTGTTAACGTTGGCGAACAATACCAACAACTGCGAGAAGCAGCACATGATGCAGAA 1102 || ||| | | | || || || ||||| ||||| |||||| ||| ||| || ||| Sbjct 690215 GCAGGTATCACAGAGGGTGAGCAGTACCAGCAACTATGAGAAGTAGCTAGTGAAGCTGAA 690274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60962140687323