Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq39 248 7e-62 >seq39 Length=18007340 Score = 248 bits (274), Expect = 7e-62 Identities = 154/165 (93%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 5019 ATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATA 5078 ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | Sbjct 17097180 ATAGGAGGTTTGAAATGGATCGGGAAGCTAAGAGTGCCAGATACTGTGCTGAGTGTAACA 17097121 Query 5079 GGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAA 5138 |||||||||| ||||||||||| |||||||||||||| || ||||||||||||||||| | Sbjct 17097120 GGCTGCATCCAGCTGAGGAAGGAGACTTTTGGGCAGAATCAAGCATGTTGGGCCTCAAGA 17097061 Query 5139 TCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||||| ||||||||||||| ||||||||| ||||||| Sbjct 17097060 TCACCTACTTTGCACTGATGGATGGAAGGGTGTATGACATCACAG 17097016 Score = 122 bits (134), Expect = 7e-24 Identities = 78/85 (92%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||| ||||||||||||||||| ||||||||||||||||| || | || Sbjct 17096943 CAGAGTGGGCTGGATGTCAGCGTGTGGGAATCTCGCCAGATACCCACAGAGTTCCCTATC 17096884 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 ||||||| |||||||| |||||||| Sbjct 17096883 ACATCTCGTTTGGTTCTCGGATGCC 17096859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40113696669228