Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq39 253 2e-63 >seq39 Length=18007340 Score = 253 bits (280), Expect = 2e-63 Identities = 155/165 (94%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 5004 ATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATA 5063 ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | Sbjct 17097180 ATAGGAGGTTTGAAATGGATCGGGAAGCTAAGAGTGCCAGATACTGTGCTGAGTGTAACA 17097121 Query 5064 GGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAA 5123 |||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| | Sbjct 17097120 GGCTGCATCCAGCTGAGGAAGGAGACTTTTGGGCAGAATCAAGCATGTTGGGCCTCAAGA 17097061 Query 5124 TCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||||| ||||||||||||| ||||||||| ||||||| Sbjct 17097060 TCACCTACTTTGCACTGATGGATGGAAGGGTGTATGACATCACAG 17097016 Score = 129 bits (142), Expect = 5e-26 Identities = 85/94 (90%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||| ||||||||||||||||| ||||||||||||||||| || |||| Sbjct 17096943 CAGAGTGGGCTGGATGTCAGCGTGTGGGAATCTCGCCAGATACCCACAGAGTTCCCTATC 17096884 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| | |||||||| ||||||||||| |||| Sbjct 17096883 ACATCTCGTTTGGTTCTCGGATGCCAGGAGCCAG 17096850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40206485789704