Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ochotona_20princeps_20[refseq_20GCF_5F000292845.1_202012-08-27] 10,421 sequences; 2,229,840,584 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq44 91.5 8e-16 seq80 78.8 5e-12 seq71 77.0 2e-11 >seq44 Length=17152255 Score = 91.5 bits (100), Expect = 8e-16 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||| |||||||||||||||||||| |||||| |||| |||| |||||||||||| Sbjct 1994069 CTGCCCAGGTATAGTTCACCATCTTTCGGGGCCTAACACATGGGCTCATGCTCCACCTCC 1994010 Query 897 CCG 899 ||| Sbjct 1994009 CCG 1994007 >seq80 Length=7444812 Score = 78.8 bits (86), Expect = 5e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 841 CCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCCCC 898 |||||||| ||||||||||||||| |||||||| | || |||| |||||||||||||| Sbjct 6784793 CCAGGCATTGTTCACCATCTTTCGAGTCCTAACACGTGTGCTCATGCTCCACCTCCCC 6784850 >seq71 Length=9112543 Score = 77.0 bits (84), Expect = 2e-11 Identities = 54/62 (87%), Gaps = 6/62 (10%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| Sbjct 2142222 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACTTGC------GCTCCACCTCC 2142275 Query 897 CC 898 || Sbjct 2142276 CC 2142277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860492559658