Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq287 246 2e-61 >seq287 Length=2063505 Score = 246 bits (272), Expect = 2e-61 Identities = 153/164 (93%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1231818 TAGGAGGTTTGAGATGGACCGTGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 1231877 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 ||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| || Sbjct 1231878 GCTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGGCTCAAGAT 1231937 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| || |||||||||||||| ||||| ||||||| Sbjct 1231938 TACCTACTTTGCACTAATGGATGGAAAGGTCTATGACATCACAG 1231981 Score = 98.7 bits (108), Expect = 8e-17 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 5182 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCA 5241 ||||||||||||||| || | |||| |||| ||||| |||||||||||||| || | ||| Sbjct 1232130 AGAGTGGGCTGGATGTCAACATGTGAGAATTTCCCCTGATACCCACAGAGTTCCGTATCA 1232189 Query 5242 CATCTCATTTGGTTCACGGATGCC 5265 |||||||||||| || ||||| || Sbjct 1232190 CATCTCATTTGGCTCTCGGATCCC 1232213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40115179746180