Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01]
7,135 sequences; 2,995,889,303 total letters
Query= NC_001461.1
Length=12573
Score E
Sequences producing significant alignments: (Bits) Value
seq287 246 2e-61
>seq287
Length=2063505
Score = 246 bits (272), Expect = 2e-61
Identities = 153/164 (93%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1231818 TAGGAGGTTTGAGATGGACCGTGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 1231877
Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139
||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||
Sbjct 1231878 GCTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGGCTCAAGAT 1231937
Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183
||||||||||| || |||||||||||||| ||||| |||||||
Sbjct 1231938 TACCTACTTTGCACTAATGGATGGAAAGGTCTATGACATCACAG 1231981
Score = 98.7 bits (108), Expect = 8e-17
Identities = 72/84 (86%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 5182 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCA 5241
||||||||||||||| || | |||| |||| ||||| |||||||||||||| || | |||
Sbjct 1232130 AGAGTGGGCTGGATGTCAACATGTGAGAATTTCCCCTGATACCCACAGAGTTCCGTATCA 1232189
Query 5242 CATCTCATTTGGTTCACGGATGCC 5265
|||||||||||| || ||||| ||
Sbjct 1232190 CATCTCATTTGGCTCTCGGATCCC 1232213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40115179746180
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |