Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octodon_20degus_20[refseq_20GCF_5F000260255.1_202012-05-01] 7,135 sequences; 2,995,889,303 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq287 251 6e-63 >seq287 Length=2063505 Score = 251 bits (278), Expect = 6e-63 Identities = 154/164 (94%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1231818 TAGGAGGTTTGAGATGGACCGTGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 1231877 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || Sbjct 1231878 GCTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGGCTCAAGAT 1231937 Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| || |||||||||||||| ||||| ||||||| Sbjct 1231938 TACCTACTTTGCACTAATGGATGGAAAGGTCTATGACATCACAG 1231981 Score = 109 bits (120), Expect = 4e-20 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 5167 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCA 5226 ||||||||||||||| || | |||| |||| ||||| |||||||||||||| || ||||| Sbjct 1232130 AGAGTGGGCTGGATGTCAACATGTGAGAATTTCCCCTGATACCCACAGAGTTCCGTATCA 1232189 Query 5227 CATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||| ||||||| || ||||| ||||| ||||| Sbjct 1232190 CATCTCATTTGGCTCTCGGATCCCAGGCACCAG 1232222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40207972297240