Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq4 241 1e-59 seq19 167 2e-37 >seq4 Length=91394100 Score = 241 bits (266), Expect = 1e-59 Identities = 151/163 (93%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| || Sbjct 39408730 AGGAGGTTTGAAATGGATCGGGATGCTAAGAGTGCCAGATACTGTGCTGAGTGCAATCGG 39408671 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| ||| Sbjct 39408670 CTGCATCCGGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGTCTCAAGATC 39408611 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 39408610 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 39408568 Score = 131 bits (144), Expect = 1e-26 Identities = 80/85 (94%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 39408476 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 39408417 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 ||||||| |||||||| ||||| || Sbjct 39408416 ACATCTCGTTTGGTTCTCGGATTCC 39408392 >seq19 Length=57279966 Score = 167 bits (184), Expect = 2e-37 Identities = 208/295 (71%), Gaps = 49/295 (17%) Strand=Plus/Plus Query 5002 CCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATA 5061 ||||||||| ||| ||| |||||||| ||| | ||| | |||| || |||| ||||| | Sbjct 9671427 CCGATGCCAAGGAGAGCGTAGGAGGTCTGAGAAGGATCAGGAAGCTGAGAGCGCCAGGTG 9671486 Query 5062 CTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAG 5121 |||||| ||||||| |||||||| |||||| |||||| ||||||||| Sbjct 9671487 CTGTGCGGAGTGTACCAGGCTGCA---------GGAAGGAGACTTTGGGGCAGAGT---- 9671533 Query 5122 CATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCAC 5181 |||| |||| ||||||| ||| || ||||||||||||||| ||||||| |||| Sbjct 9671534 -----TGGGTCTCACGATCACCTCCTTGGCACTGATGGATGGAAAGCTGTATGACGTCAC 9671588 Query 5182 AG------------------------------AGTGGGCTGGATGCCAGCGTGTGGGAAT 5211 || || | |||||||||||| | |||||||| Sbjct 9671589 AGCTATATGATGTCACAGCTGTATGACGTCACAGAGAGCTGGATGCCAGTGAGTGGGAAT 9671648 Query 5212 CT-CCCCAGATACCCACAGAGTCCCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || |||||||||||||||||||||| | || |||||| |||||||| |||| || Sbjct 9671649 CTCCCCCAGATACCCACAGAGTCCCCTATCGCATCTCGTTTGGTTCTGGGATTCC 9671703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40116937232988