Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq4 244 9e-61 seq19 176 4e-40 >seq4 Length=91394100 Score = 244 bits (270), Expect = 9e-61 Identities = 152/163 (93%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| || Sbjct 39408730 AGGAGGTTTGAAATGGATCGGGATGCTAAGAGTGCCAGATACTGTGCTGAGTGCAATCGG 39408671 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct 39408670 CTGCATCCGGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGTCTCAAGATC 39408611 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 39408610 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 39408568 Score = 138 bits (152), Expect = 9e-29 Identities = 87/94 (93%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 39408476 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 39408417 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| | |||||||| ||||| || || ||||| Sbjct 39408416 ACATCTCGTTTGGTTCTCGGATTCCGGGCACCAG 39408383 >seq19 Length=57279966 Score = 176 bits (194), Expect = 4e-40 Identities = 216/305 (71%), Gaps = 49/305 (16%) Strand=Plus/Plus Query 4986 ACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGAT 5045 |||||||||| ||| ||| |||||||| ||| | ||| | |||| || |||| ||||| | Sbjct 9671426 ACCGATGCCAAGGAGAGCGTAGGAGGTCTGAGAAGGATCAGGAAGCTGAGAGCGCCAGGT 9671485 Query 5046 ACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAA 5105 |||||| ||||||| |||||||| |||||| |||||| ||||||||| Sbjct 9671486 GCTGTGCGGAGTGTACCAGGCTGCA---------GGAAGGAGACTTTGGGGCAGAGT--- 9671533 Query 5106 GCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCA 5165 |||| |||| ||||||| ||| || ||||||||||||||| ||||||| ||| Sbjct 9671534 ------TGGGTCTCACGATCACCTCCTTGGCACTGATGGATGGAAAGCTGTATGACGTCA 9671587 Query 5166 CAG------------------------------AGTGGGCTGGATGCCAGCGTGTGGGAA 5195 ||| || | |||||||||||| | ||||||| Sbjct 9671588 CAGCTATATGATGTCACAGCTGTATGACGTCACAGAGAGCTGGATGCCAGTGAGTGGGAA 9671647 Query 5196 TCT-CCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGT 5254 ||| |||||||||||||||||||||| |||| |||| | |||||||| |||| || || Sbjct 9671648 TCTCCCCCAGATACCCACAGAGTCCCCTATCGCATCTCGTTTGGTTCTGGGATTCCGGGC 9671707 Query 5255 ACCAG 5259 ||||| Sbjct 9671708 ACCAG 9671712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40209733849384