Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq326 259 4e-65 seq383 196 4e-46 seq182 179 3e-41 seq754 174 1e-39 seq55 172 4e-39 seq109 156 3e-34 seq265 95.1 1e-15 >seq326 Length=1123872 Score = 259 bits (286), Expect = 4e-65 Identities = 155/163 (95%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 187759 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAACAGG 187700 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||| Sbjct 187699 CTGCATCCTGCTGAGGAGGGAGACTTTTGGGCAGAGTCGAGCATGTTAGGCCTCAAGATC 187640 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||| ||||| ||||||| Sbjct 187639 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGACATCACAG 187597 Score = 125 bits (138), Expect = 6e-25 Identities = 81/89 (91%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 5178 TCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTT 5237 || |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 187514 TCGCAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCTCCAGATACCCACAGAGTTCCTT 187455 Query 5238 GTCACATCTCATTTGGTTCACGGATGCCT 5266 ||||||||||||||||| ||| | ||| Sbjct 187454 ACCACATCTCATTTGGTTCTCGGGTTCCT 187426 >seq383 Length=1291462 Score = 196 bits (216), Expect = 4e-46 Identities = 206/267 (77%), Gaps = 8/267 (3%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| ||| |||| | || ||| | ||| ||||| ||| ||| ||||||||||| Sbjct 695701 ATGTGTAGCTGATGTAAAGGGAAGTGTTAGAGATTTGAGATG-ACCATGAACCTAAGAGA 695759 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCT----GCTGAGGAAGGTGACTTTTG 5109 |||||||||||||| ||||||||||||| ||||| |||||||| || ||||| | Sbjct 695760 ACCAGATACTGTGCTAAGTGTAATAGGCTACATCCATCCAGCTGAGGAGGGAGACTT--G 695817 Query 5110 GGCAGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGT 5169 |||||| || |||||||||||||||| |||| || | |||||| | ||||| | Sbjct 695818 GGCAGATTCAAGCATGTTGGGCCTCATGATCAGTGACACTATACTGATGAACAGAAAGAT 695877 Query 5170 GTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAG 5229 | ||| |||||||||||||| |||| ||||| || |||||||| || |||| | |||| Sbjct 695878 ATGTGACATCACAGAGTGGGCAGGATTCCAGCATGGGGGAATCT-CCTGGATATCTACAG 695936 Query 5230 AGTCCCTTGTCACATCTCATTTGGTTC 5256 ||| || | |||||||||| |||| || Sbjct 695937 AGTTCCATATCACATCTCAGTTGGCTC 695963 >seq182 Length=5800765 Score = 179 bits (198), Expect = 3e-41 Identities = 200/263 (76%), Gaps = 13/263 (5%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||||||| ||| || ||| |||||| ||||| | || ||||| ||||||||| Sbjct 3014306 ATGTGCAGCTATTGCTTAGGGAAGTGTAGGAGATTTGAGGTAGATCGGGAGCCTAAGAGT 3014365 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 | ||| | ||||||| |||||||||||| | |||||||||| | || ||| | ||||| Sbjct 3014366 TCTAGACAATGTGCTG-GTGTAATAGGCTACCTCCTGCTGAGAAGGGAGACCT--GGGCA 3014422 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 || | |||||| ||||||| |||| || ||| ||||||| ||| | ||| Sbjct 3014423 GATCCAAGCATGGCAGGCCTCAGGATCA--------GCACTGGTGGATGGGAAGAT-TAT 3014473 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 ||| |||||||||||||||||| ||||| |||||| |||| || ||||||||||| | Sbjct 3014474 GATGTCACAGAGTGGGCTGGATTCCAGCATGTGGGCATCT-CCTGGATACCCACAGGGGT 3014532 Query 5234 CCTTGTCACATCTCATTTGGTTC 5256 || | |||||||||| |||| || Sbjct 3014533 CCATATCACATCTCAGTTGGCTC 3014555 >seq754 Length=1523685 Score = 174 bits (192), Expect = 1e-39 Identities = 142/170 (84%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGG-TTTGAAATGGACCGGGAACCTAAGAG 5052 ||||| ||| || |||| ||||||||||| || |||||||||||| || || |||||| Sbjct 502025 ATGTGTAGCTGACGCCAAGGAAAGCATAGATGGGTTTGAAATGGACAGGAAAG-TAAGAG 501967 Query 5053 TGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGC 5112 ||| |||||||| ||||||||||||| |||||||||| ||| | || | |||||| | Sbjct 501966 TGCTAGATACTGCACTGAGTGTAATAGACTGCATCCTGATGAAAAGGGATATTTTTGGAC 501907 Query 5113 AGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATG 5162 |||||| ||||||||||||||||| ||||| |||||||| |||||| ||| Sbjct 501906 AGAGTCAAGCATGTTGGGCCTCAAGATCACATACTTTGCACTGATGAATG 501857 >seq55 Length=6252516 Score = 172 bits (190), Expect = 4e-39 Identities = 199/262 (76%), Gaps = 17/262 (6%) Strand=Plus/Plus Query 4999 CAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAG 5058 |||| ||| || ||||||| | ||||||||| ||| ||| || || | ||||||| | Sbjct 2207946 CAGCTGATAGCAAGGAAAGCTTCAGAGGTTTGAGATGCACCAGGCACTTCAGAGTGCTGG 2208005 Query 5059 ATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTC 5118 | ||||||| || | | ||| | ||| |||||||||||||| |||||| |||| Sbjct 2208006 ACACTGTGCCAAGAGGATTAGACGGCACCCTGCTGAGGAAGGAGACTTT------GAGTA 2208059 Query 5119 G---AGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGA 5175 | |||||||| ||||||| ||||| ||||||| ||||| |||| ||||| ||||| Sbjct 2208060 GGAAAGCATGTTAAGCCTCAACATCACTTACTTTGTACTGAT-AATGGCAAGGTCTATGA 2208118 Query 5176 TATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT-CCCCAGATACCCACAGAGTCC 5234 || ||||||||| | ||||||||| || |||||| ||||||||||| |||||| | Sbjct 2208119 CAT--CAGAGTGGGATAGATGCCAGC--ATGAGAATCTCCCCCAGATACC--CAGAGTTC 2208172 Query 5235 CTTGTCACATCTCATTTGGTTC 5256 | | ||||| |||||||||| Sbjct 2208173 CATACCACATGACATTTGGTTC 2208194 >seq109 Length=6874426 Score = 156 bits (172), Expect = 3e-34 Identities = 183/242 (76%), Gaps = 13/242 (5%) Strand=Plus/Minus Query 5024 AGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTG 5083 ||| ||| |||||| | |||||| || |||| |||||||||| |||||| | Sbjct 258234 AGGCTTGGAATGGAATGAGAACCTCGGA-TGCC-------GTGCTGAGTGCAATAGGTCG 258183 Query 5084 CATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGA-GCATGTTGGGCCTCAAAATCAC 5142 ||| ||||| |||| | ||| | ||||||| || | | || || ||||||| |||| Sbjct 258182 CATTCTGCTCAGGACAGAGACCTG-GGGCAGAATCAAAGTGTGCTGAGCCTCAAGATCAT 258124 Query 5143 CTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCG 5202 ||||| || | ||||||||||||| ||||| || | ||| ||||| |||||||||| Sbjct 258123 GTACTTGGCATGGGTGGATGGAAAGGTCTATGACATAATAGATTGGGCCGGATGCCAGCA 258064 Query 5203 TGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCACATCTCATTTGGTTCACGGAT 5262 |||||||||||||| || |||| ||| |||| | || || |||||||||||||| ||| Sbjct 258063 TGTGGGAATCTCCCAAGTTACC--CAGGCTCCC-TATCGCACCTCATTTGGTTCACAGAT 258007 Query 5263 GC 5264 || Sbjct 258006 GC 258005 >seq265 Length=4092790 Score = 95.1 bits (104), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 5091 CTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTG 5150 ||||| |||| ||||||||||||||| | |||||||||||| |||| ||||||||||| Sbjct 3884927 CTGAGAAAGGAGACTTTTGGGCAGAGGCATGCATGTTGGGCC-AAAAACCACCTACTTTG 3884985 Query 5151 CGCTGATGGATGGAAAGGTGTATG 5174 | ||||||||||||||| |||| Sbjct 3884986 CATTGATGGATGGAAAGGGCTATG 3885009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40104444363228