Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_001608.3 Length=19111 Score E Sequences producing significant alignments: (Bits) Value seq13 80.6 3e-11 >seq13 Length=10780687 Score = 80.6 bits (88), Expect = 3e-11 Identities = 116/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 923 GAATACGCACCATTTGCACGGGTTCTGAATTTATCAGGGATTAACAACCTCGAACATGGA 982 || || || |||||||| | | | ||| | ||||| | || ||| | |||||||| Sbjct 8889562 GAGTATGCTCCATTTGCTCATATACGAAATCTGTCAGGAGTAAATAACTTAGAACATGGG 8889621 Query 983 CTCTATCCTCAGCTTTCAGCAATTGCGCTGGGTGTGGCAACAGCACACGGCAGTACATTG 1042 || | ||| || | || || |||| ||||| || |||||||||| | | | | | Sbjct 8889622 CTATTTCCACACTTGTCTGCCGTTGCCCTGGGAGTAACAACAGCACATGATGGAATACTA 8889681 Query 1043 GCTGGTGTCAATGTTGGCGAACAATATCAACAACTACGAGAGGC 1086 || ||||||| || | || |||||||||||||||||||| || Sbjct 8889682 GCAGGTGTCACCGTACGAGAGCAATATCAACAACTACGAGAAGC 8889725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 61014977875302