Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202
013-12-03] 30,921 sequences; 2,630,541,020 total letters
Query= NC_003678.1
Length=12602
Score E
Sequences producing significant alignments: (Bits) Value
seq326 253 2e-63
seq383 208 6e-50
seq182 197 1e-46
seq55 192 5e-45
seq754 187 2e-43
seq109 165 7e-37
seq265 98.7 8e-17
>seq326
Length=1123872
Score = 253 bits (280), Expect = 2e-63
Identities = 154/163 (94%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 187759 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAACAGG 187700
Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125
||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| |||
Sbjct 187699 CTGCATCCTGCTGAGGAGGGAGACTTTTGGGCAGAGTCGAGCATGTTAGGCCTCAAGATC 187640
Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168
||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 187639 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGACATCACAG 187597
Score = 131 bits (144), Expect = 1e-26
Identities = 87/97 (90%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 5163 TCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTT 5222
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 187514 TCGCAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCTCCAGATACCCACAGAGTTCCTT 187455
Query 5223 ATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259
| |||||| |||||||||| ||| | || || |||||
Sbjct 187454 ACCACATCTCATTTGGTTCTCGGGTTCCTGGCACCAG 187418
>seq383
Length=1291462
Score = 208 bits (230), Expect = 6e-50
Identities = 228/299 (76%), Gaps = 8/299 (3%)
Strand=Plus/Plus
Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024
||||| ||| ||||||| | | |||| | || ||| | ||| ||||| ||| |||
Sbjct 695687 CAATGGATATTGTGATGTGTAGCTGATGTAAAGGGAAGTGTTAGAGATTTGAGATG-ACC 695745
Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCT----GCTGAG 5080
||||||||||| |||||||||||||| ||||||||||||| ||||| ||||||
Sbjct 695746 ATGAACCTAAGAGAACCAGATACTGTGCTAAGTGTAATAGGCTACATCCATCCAGCTGAG 695805
Query 5081 GAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTG 5140
|| || ||||| ||||||| ||||||||||||||||||| |||| || | |||
Sbjct 695806 GAGGGAGACTT--GGGCAGATTCAAGCATGTTGGGCCTCATGATCAGTGACACTATACTG 695863
Query 5141 ATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCC 5200
||| | ||||| | | ||| |||||||||||||| |||| ||||| || |||||||| |
Sbjct 695864 ATGAACAGAAAGATATGTGACATCACAGAGTGGGCAGGATTCCAGCATGGGGGAATCT-C 695922
Query 5201 CCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259
| |||| | ||||||| || ||||||||| || |||| || | |||||||||||
Sbjct 695923 CTGGATATCTACAGAGTTCCATATCACATCTCAGTTGGCTCTTGAGGACCAGGTACCAG 695981
>seq182
Length=5800765
Score = 197 bits (218), Expect = 1e-46
Identities = 216/283 (76%), Gaps = 13/283 (5%)
Strand=Plus/Plus
Query 4977 TGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGA 5036
||||||||| | ||| || ||| |||||| ||||| | || ||||| |||||||
Sbjct 3014304 TGATGTGCAGCTATTGCTTAGGGAAGTGTAGGAGATTTGAGGTAGATCGGGAGCCTAAGA 3014363
Query 5037 GTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGG 5096
|| | ||| | ||||||| |||||||||||| | |||||||||| | || ||| | |||
Sbjct 3014364 GTTCTAGACAATGTGCTG-GTGTAATAGGCTACCTCCTGCTGAGAAGGGAGACCT--GGG 3014420
Query 5097 CAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGT 5156
|||| |||||||| ||||||| |||| || ||| ||||||| ||| | |
Sbjct 3014421 CAGATCCAAGCATGGCAGGCCTCAGGATCA--------GCACTGGTGGATGGGAAGAT-T 3014471
Query 5157 ATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAG 5216
||||| |||||||||||||||||| ||||| |||||| |||| || ||||||||||| |
Sbjct 3014472 ATGATGTCACAGAGTGGGCTGGATTCCAGCATGTGGGCATCT-CCTGGATACCCACAGGG 3014530
Query 5217 TCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259
|| ||||||||| || |||| || || | |||||||||||
Sbjct 3014531 GTCCATATCACATCTCAGTTGGCTCTTGGGTACCAGGTACCAG 3014573
>seq55
Length=6252516
Score = 192 bits (212), Expect = 5e-45
Identities = 226/298 (76%), Gaps = 12/298 (4%)
Strand=Plus/Plus
Query 4977 TGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGA 5036
||||| || | ||| || ||||||| | ||||||||| ||| ||| || || | |||
Sbjct 2207939 TGATGCACAGCTGATAGCAAGGAAAGCTTCAGAGGTTTGAGATGCACCAGGCACTTCAGA 2207998
Query 5037 GTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGG 5096
|||| || ||||||| || | | ||| | ||| |||||||||||||| |||||| |
Sbjct 2207999 GTGCTGGACACTGTGCCAAGAGGATTAGACGGCACCCTGCTGAGGAAGGAGACTTT---G 2208055
Query 5097 CAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGT 5156
|| ||||||||| ||||||| ||||| ||||||| ||||| |||| ||||| |
Sbjct 2208056 AGTAGGAAAGCATGTTAAGCCTCAACATCACTTACTTTGTACTGAT-AATGGCAAGGTCT 2208114
Query 5157 ATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT-CCCCAGATACCCACAGA 5215
|||| || ||||||||| | ||||||||| || |||||| ||||||||||| ||||
Sbjct 2208115 ATGACAT--CAGAGTGGGATAGATGCCAGC--ATGAGAATCTCCCCCAGATACC--CAGA 2208168
Query 5216 GTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAG-AGAGAG 5272
|| || || ||||| |||||||||| || | |||||||||| | ||| ||||||
Sbjct 2208169 GTTCCATACCACATGACATTTGGTTCTGGGTTACCAGGTACCAATGGTCAGAAGAGAG 2208226
>seq754
Length=1523685
Score = 187 bits (206), Expect = 2e-43
Identities = 157/190 (83%), Gaps = 2/190 (1%)
Strand=Plus/Minus
Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGG-TTTGAA 5017
|||| ||||| ||| |||||||| | | || |||| ||||||||||| || ||||||
Sbjct 502045 AAGAGGCAATGGTTACCATGATGTGTAGCTGACGCCAAGGAAAGCATAGATGGGTTTGAA 501986
Query 5018 ATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCT 5077
|||||| || || ||||||||| |||||||| ||||||||||||| |||||||||| |
Sbjct 501985 ATGGACAGGAAAG-TAAGAGTGCTAGATACTGCACTGAGTGTAATAGACTGCATCCTGAT 501927
Query 5078 GAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCG 5137
|| | || | |||||| ||||||||||||||||||||||||| ||||| ||||||||
Sbjct 501926 GAAAAGGGATATTTTTGGACAGAGTCAAGCATGTTGGGCCTCAAGATCACATACTTTGCA 501867
Query 5138 CTGATGGATG 5147
|||||| |||
Sbjct 501866 CTGATGAATG 501857
>seq109
Length=6874426
Score = 165 bits (182), Expect = 7e-37
Identities = 214/290 (74%), Gaps = 17/290 (6%)
Strand=Plus/Minus
Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAG----GTTTGAAATG 5020
|| |||| || |||||| | | | ||||||| | || | || || | ||| ||||
Sbjct 258282 CAGTGAACACTATGATGGGTAGCTGATGCCAAAGCAAACCTAACAGACAGGCTTGGAATG 258223
Query 5021 GACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAG 5080
|| | |||||| || |||| |||||||||| |||||| |||| ||||| ||
Sbjct 258222 GAATGAGAACCTCGGA-TGCC-------GTGCTGAGTGCAATAGGTCGCATTCTGCTCAG 258171
Query 5081 GAAGGTGACTTTTGGGCAGAGTCAA-GCATGTTGGGCCTCAAAATCACCTACTTTGCGCT 5139
|| | ||| | ||||||| |||| | || || ||||||| |||| ||||| ||
Sbjct 258170 GACAGAGACCTG-GGGCAGAATCAAAGTGTGCTGAGCCTCAAGATCATGTACTTGGCATG 258112
Query 5140 GATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTC 5199
| ||||||||||||| ||||| || | ||| ||||| |||||||||| ||||||||||||
Sbjct 258111 GGTGGATGGAAAGGTCTATGACATAATAGATTGGGCCGGATGCCAGCATGTGGGAATCTC 258052
Query 5200 CCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGC 5249
|| || |||| ||| |||| |||| || | |||||||||||| |||||
Sbjct 258051 CCAAGTTACC--CAGGCTCCC-TATCGCACCTCATTTGGTTCACAGATGC 258005
>seq265
Length=4092790
Score = 98.7 bits (108), Expect = 8e-17
Identities = 73/84 (87%), Gaps = 1/84 (1%)
Strand=Plus/Plus
Query 5076 CTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTG 5135
||||| |||| ||||||||||||||| || |||||||||||| |||| |||||||||||
Sbjct 3884927 CTGAGAAAGGAGACTTTTGGGCAGAGGCATGCATGTTGGGCC-AAAAACCACCTACTTTG 3884985
Query 5136 CGCTGATGGATGGAAAGGTGTATG 5159
| ||||||||||||||| ||||
Sbjct 3884986 CATTGATGGATGGAAAGGGCTATG 3885009
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40197212081704
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |