Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq326 253 2e-63 seq383 208 6e-50 seq182 197 1e-46 seq55 192 5e-45 seq754 187 2e-43 seq109 165 7e-37 seq265 98.7 8e-17 >seq326 Length=1123872 Score = 253 bits (280), Expect = 2e-63 Identities = 154/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 187759 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAACAGG 187700 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct 187699 CTGCATCCTGCTGAGGAGGGAGACTTTTGGGCAGAGTCGAGCATGTTAGGCCTCAAGATC 187640 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||| ||||| ||||||| Sbjct 187639 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGACATCACAG 187597 Score = 131 bits (144), Expect = 1e-26 Identities = 87/97 (90%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 5163 TCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTT 5222 || |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 187514 TCGCAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCTCCAGATACCCACAGAGTTCCTT 187455 Query 5223 ATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 | |||||| |||||||||| ||| | || || ||||| Sbjct 187454 ACCACATCTCATTTGGTTCTCGGGTTCCTGGCACCAG 187418 >seq383 Length=1291462 Score = 208 bits (230), Expect = 6e-50 Identities = 228/299 (76%), Gaps = 8/299 (3%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||||| ||| ||||||| | | |||| | || ||| | ||| ||||| ||| ||| Sbjct 695687 CAATGGATATTGTGATGTGTAGCTGATGTAAAGGGAAGTGTTAGAGATTTGAGATG-ACC 695745 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCT----GCTGAG 5080 ||||||||||| |||||||||||||| ||||||||||||| ||||| |||||| Sbjct 695746 ATGAACCTAAGAGAACCAGATACTGTGCTAAGTGTAATAGGCTACATCCATCCAGCTGAG 695805 Query 5081 GAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTG 5140 || || ||||| ||||||| ||||||||||||||||||| |||| || | ||| Sbjct 695806 GAGGGAGACTT--GGGCAGATTCAAGCATGTTGGGCCTCATGATCAGTGACACTATACTG 695863 Query 5141 ATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCC 5200 ||| | ||||| | | ||| |||||||||||||| |||| ||||| || |||||||| | Sbjct 695864 ATGAACAGAAAGATATGTGACATCACAGAGTGGGCAGGATTCCAGCATGGGGGAATCT-C 695922 Query 5201 CCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 | |||| | ||||||| || ||||||||| || |||| || | ||||||||||| Sbjct 695923 CTGGATATCTACAGAGTTCCATATCACATCTCAGTTGGCTCTTGAGGACCAGGTACCAG 695981 >seq182 Length=5800765 Score = 197 bits (218), Expect = 1e-46 Identities = 216/283 (76%), Gaps = 13/283 (5%) Strand=Plus/Plus Query 4977 TGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGA 5036 ||||||||| | ||| || ||| |||||| ||||| | || ||||| ||||||| Sbjct 3014304 TGATGTGCAGCTATTGCTTAGGGAAGTGTAGGAGATTTGAGGTAGATCGGGAGCCTAAGA 3014363 Query 5037 GTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGG 5096 || | ||| | ||||||| |||||||||||| | |||||||||| | || ||| | ||| Sbjct 3014364 GTTCTAGACAATGTGCTG-GTGTAATAGGCTACCTCCTGCTGAGAAGGGAGACCT--GGG 3014420 Query 5097 CAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGT 5156 |||| |||||||| ||||||| |||| || ||| ||||||| ||| | | Sbjct 3014421 CAGATCCAAGCATGGCAGGCCTCAGGATCA--------GCACTGGTGGATGGGAAGAT-T 3014471 Query 5157 ATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAG 5216 ||||| |||||||||||||||||| ||||| |||||| |||| || ||||||||||| | Sbjct 3014472 ATGATGTCACAGAGTGGGCTGGATTCCAGCATGTGGGCATCT-CCTGGATACCCACAGGG 3014530 Query 5217 TCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 || ||||||||| || |||| || || | ||||||||||| Sbjct 3014531 GTCCATATCACATCTCAGTTGGCTCTTGGGTACCAGGTACCAG 3014573 >seq55 Length=6252516 Score = 192 bits (212), Expect = 5e-45 Identities = 226/298 (76%), Gaps = 12/298 (4%) Strand=Plus/Plus Query 4977 TGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGA 5036 ||||| || | ||| || ||||||| | ||||||||| ||| ||| || || | ||| Sbjct 2207939 TGATGCACAGCTGATAGCAAGGAAAGCTTCAGAGGTTTGAGATGCACCAGGCACTTCAGA 2207998 Query 5037 GTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGG 5096 |||| || ||||||| || | | ||| | ||| |||||||||||||| |||||| | Sbjct 2207999 GTGCTGGACACTGTGCCAAGAGGATTAGACGGCACCCTGCTGAGGAAGGAGACTTT---G 2208055 Query 5097 CAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGT 5156 || ||||||||| ||||||| ||||| ||||||| ||||| |||| ||||| | Sbjct 2208056 AGTAGGAAAGCATGTTAAGCCTCAACATCACTTACTTTGTACTGAT-AATGGCAAGGTCT 2208114 Query 5157 ATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT-CCCCAGATACCCACAGA 5215 |||| || ||||||||| | ||||||||| || |||||| ||||||||||| |||| Sbjct 2208115 ATGACAT--CAGAGTGGGATAGATGCCAGC--ATGAGAATCTCCCCCAGATACC--CAGA 2208168 Query 5216 GTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAG-AGAGAG 5272 || || || ||||| |||||||||| || | |||||||||| | ||| |||||| Sbjct 2208169 GTTCCATACCACATGACATTTGGTTCTGGGTTACCAGGTACCAATGGTCAGAAGAGAG 2208226 >seq754 Length=1523685 Score = 187 bits (206), Expect = 2e-43 Identities = 157/190 (83%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGG-TTTGAA 5017 |||| ||||| ||| |||||||| | | || |||| ||||||||||| || |||||| Sbjct 502045 AAGAGGCAATGGTTACCATGATGTGTAGCTGACGCCAAGGAAAGCATAGATGGGTTTGAA 501986 Query 5018 ATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCT 5077 |||||| || || ||||||||| |||||||| ||||||||||||| |||||||||| | Sbjct 501985 ATGGACAGGAAAG-TAAGAGTGCTAGATACTGCACTGAGTGTAATAGACTGCATCCTGAT 501927 Query 5078 GAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCG 5137 || | || | |||||| ||||||||||||||||||||||||| ||||| |||||||| Sbjct 501926 GAAAAGGGATATTTTTGGACAGAGTCAAGCATGTTGGGCCTCAAGATCACATACTTTGCA 501867 Query 5138 CTGATGGATG 5147 |||||| ||| Sbjct 501866 CTGATGAATG 501857 >seq109 Length=6874426 Score = 165 bits (182), Expect = 7e-37 Identities = 214/290 (74%), Gaps = 17/290 (6%) Strand=Plus/Minus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAG----GTTTGAAATG 5020 || |||| || |||||| | | | ||||||| | || | || || | ||| |||| Sbjct 258282 CAGTGAACACTATGATGGGTAGCTGATGCCAAAGCAAACCTAACAGACAGGCTTGGAATG 258223 Query 5021 GACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAG 5080 || | |||||| || |||| |||||||||| |||||| |||| ||||| || Sbjct 258222 GAATGAGAACCTCGGA-TGCC-------GTGCTGAGTGCAATAGGTCGCATTCTGCTCAG 258171 Query 5081 GAAGGTGACTTTTGGGCAGAGTCAA-GCATGTTGGGCCTCAAAATCACCTACTTTGCGCT 5139 || | ||| | ||||||| |||| | || || ||||||| |||| ||||| || Sbjct 258170 GACAGAGACCTG-GGGCAGAATCAAAGTGTGCTGAGCCTCAAGATCATGTACTTGGCATG 258112 Query 5140 GATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTC 5199 | ||||||||||||| ||||| || | ||| ||||| |||||||||| |||||||||||| Sbjct 258111 GGTGGATGGAAAGGTCTATGACATAATAGATTGGGCCGGATGCCAGCATGTGGGAATCTC 258052 Query 5200 CCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGC 5249 || || |||| ||| |||| |||| || | |||||||||||| ||||| Sbjct 258051 CCAAGTTACC--CAGGCTCCC-TATCGCACCTCATTTGGTTCACAGATGC 258005 >seq265 Length=4092790 Score = 98.7 bits (108), Expect = 8e-17 Identities = 73/84 (87%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 5076 CTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTG 5135 ||||| |||| ||||||||||||||| || |||||||||||| |||| ||||||||||| Sbjct 3884927 CTGAGAAAGGAGACTTTTGGGCAGAGGCATGCATGTTGGGCC-AAAAACCACCTACTTTG 3884985 Query 5136 CGCTGATGGATGGAAAGGTGTATG 5159 | ||||||||||||||| |||| Sbjct 3884986 CATTGATGGATGGAAAGGGCTATG 3885009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40197212081704