Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_006432.1 Length=18875 Score E Sequences producing significant alignments: (Bits) Value seq13 104 3e-18 >seq13 Length=10780687 Score = 104 bits (114), Expect = 3e-18 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 1331 GAATATGCTCCATTTGCACGTCTCCTCAATCTTTCTGGAGTCAACAACTTGGAACATGGG 1390 || |||||||||||||| | | | | ||||| || ||||| || ||||| ||||||||| Sbjct 8889562 GAGTATGCTCCATTTGCTCATATACGAAATCTGTCAGGAGTAAATAACTTAGAACATGGG 8889621 Query 1391 CTTTATCCACAACTCTCAGCCATTGCTTTGGGTGTTGCAACTGCCCACGGGAGCACGCTG 1450 || | |||||| | || ||| |||| |||| || |||| || || | | | || Sbjct 8889622 CTATTTCCACACTTGTCTGCCGTTGCCCTGGGAGTAACAACAGCACATGATGGAATACTA 8889681 Query 1451 GCTGGTGTTAATGTAGGGGAGCAATATCAGCAACTGCGTGAGGCTGCTACTGAAGCTGAA 1510 || ||||| | ||| | ||||||||||| ||||| || || || | | ||||| |||| Sbjct 8889682 GCAGGTGTCACCGTACGAGAGCAATATCAACAACTACGAGAAGCAGTTGGTGAAGTTGAA 8889741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60260047877474