Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_014372.1 Length=18935 Score E Sequences producing significant alignments: (Bits) Value seq13 87.8 2e-13 >seq13 Length=10780687 Score = 87.8 bits (96), Expect = 2e-13 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 1337 GAGTATGCTCCTTTTGCTCGCTTGCTGAATCTTTCTGGAGTCAACAATCTCGAGCACGGA 1396 ||||||||||| ||||||| | | ||||| || ||||| || || | || || || Sbjct 8889562 GAGTATGCTCCATTTGCTCATATACGAAATCTGTCAGGAGTAAATAACTTAGAACATGGG 8889621 Query 1397 CTGTTTCCTCAGCTTTCTGCAATTGCCCTAGGTGTCGCAACGGCACACGGCAGTACCCTG 1456 || ||||| || | ||||| ||||||| || || |||| ||||| | | | || Sbjct 8889622 CTATTTCCACACTTGTCTGCCGTTGCCCTGGGAGTAACAACAGCACATGATGGAATACTA 8889681 Query 1457 GCAGGAGTAAATGTGGGGGAACAGTATCAGCAACTACGAGAAGCAG 1502 ||||| || | || | || || ||||| |||||||||||||||| Sbjct 8889682 GCAGGTGTCACCGTACGAGAGCAATATCAACAACTACGAGAAGCAG 8889727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60451979232854