Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peromyscus_20maniculatus_20bairdii_20[refseq_20GCF_5F000500345.1_202 013-12-03] 30,921 sequences; 2,630,541,020 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq189 111 9e-22 seq50 87.8 1e-14 seq89 86.0 4e-14 seq705 77.0 2e-11 seq5 77.0 2e-11 >seq189 Length=5389248 Score = 111 bits (122), Expect = 9e-22 Identities = 64/66 (97%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 960952 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCGTGCGCTCGTGCTCCACCTCC 961011 Query 897 CCGACG 902 ||| || Sbjct 961012 CCGGCG 961017 >seq50 Length=9356277 Score = 87.8 bits (96), Expect = 1e-14 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| Sbjct 6955271 CTGCCCAGGCATAGTTCACCATCTTCCGGGTCCTAACATGTGCGCTCATGCTCCACCTCC 6955330 Query 897 C 897 | Sbjct 6955331 C 6955331 >seq89 Length=8775216 Score = 86.0 bits (94), Expect = 4e-14 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||| ||||||||||||| | || |||| |||||||||||| Sbjct 1912877 CTGCCCAGGCATAGTTCACCATTTTTCGGGTCCTAATGAGTGTGCTCCTGCTCCACCTCC 1912818 Query 897 CC 898 || Sbjct 1912817 CC 1912816 >seq705 Length=2403095 Score = 77.0 bits (84), Expect = 2e-11 Identities = 50/55 (91%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCA 891 ||||||||||| |||| ||||||||||||||||||| || || |||||||||||| Sbjct 581578 CTGCCCAGGCACAGTTGACCATCTTTCGGGTCCTAATGCGTGTGCTCGTGCTCCA 581524 >seq5 Length=13774573 Score = 77.0 bits (84), Expect = 2e-11 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||| |||||| |||||||||||| ||||||| |||||| || ||||||||||| | Sbjct 1886151 CTGCCCAAGCATAGGTCACCATCTTTCAAGTCCTAATGCATGCACTTGTGCTCCACCTTC 1886210 Query 897 CC 898 || Sbjct 1886211 CC 1886212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2859887768658