Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq388646 360 2e-95 seq1304057 241 1e-59 seq937285 197 1e-46 seq1460021 196 4e-46 seq1224250 129 5e-26 seq1068018 127 2e-25 >seq388646 Length=392 Score = 360 bits (398), Expect = 2e-95 Identities = 242/270 (90%), Gaps = 3/270 (1%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 90 ATGTGTAGCCGATGCCAAGGGAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 149 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 |||| ||||||||||||||| | |||||||| ||||||||||| || ||||||||||| Sbjct 150 GCCAAGTACTGTGCTGAGTGTGACAGGCTGCACCCTGCTGAGGAGGGAGACTTTTGGGCT 209 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||| ||| Sbjct 210 GAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCACTGATGGACAGAAAGGTCTAT 269 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 |||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| ||| Sbjct 270 GATATCACAGAGTGGGCTGGGTGCCAGTGTGTGGGAATCTCTCCAGATACCCACATAGTT 329 Query 5234 CCTTGTCAC---ATCTCATTTGGTTCACGG 5260 |||| ||| |||||||||||||| ||| Sbjct 330 CCTTACCACATTATCTCATTTGGTTCTCGG 359 >seq1304057 Length=3075 Score = 241 bits (266), Expect = 1e-59 Identities = 151/163 (93%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||||||||||||||| || |||||||||||||| ||||||||||||||| | ||| Sbjct 891 AGGAGGTTTGAAATGGACCGAGAGCCTAAGAGTGCCAGGTACTGTGCTGAGTGTGACAGG 832 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct 831 CTGCACCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 772 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| |||||||| |||||||| ||||||||||||| Sbjct 771 ACCTACTTTGCACTGATGGACGGAAAGGTCTATGATATCACAG 729 Score = 118 bits (130), Expect = 8e-23 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 ||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| | Sbjct 643 CAGAGTGGGCTGGGTGCCAGCGTGTGGGAATCTCTCCAGATACCCACAGAGTTCCTTACC 584 Query 5241 ACATCTCATTTGGTTCACGG 5260 |||||||||||||||| ||| Sbjct 583 ACATCTCATTTGGTTCTCGG 564 >seq937285 Length=1226 Score = 197 bits (218), Expect = 1e-46 Identities = 206/267 (77%), Gaps = 14/267 (5%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| ||| ||||| |||||| |||||| |||| ||| || | ||| |||||| Sbjct 468 ATGTGTAGCTGATGCAGAGGAAAGTGTAGGAGAGTTGAGATGAACATG-AACATAAGAGA 526 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCC----TGCTGAGGAAGGTGACTTTTG 5109 |||||||||||||||||||||||||| | ||| | |||||||||||| ||||| | Sbjct 527 ACCAGATACTGTGCTGAGTGTAATAGGTTACATACATGCTGCTGAGGAAGGAGACTT--G 584 Query 5110 GGCAGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGT 5169 |||||| || | ||||||| ||||||| |||| || |||||| ||||||| | Sbjct 585 GGCAGATTCAAACATGTTGAGCCTCAAGATCA------TTATACTGATGAGTGGAAAGAT 638 Query 5170 GTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAG 5229 ||||| |||||||||||||| |||| ||||| |||||||||| || |||||| |||| Sbjct 639 CTATGACATCACAGAGTGGGCAGGATTCCAGCATGTGGGAATC-ACCTGGATACCTACAG 697 Query 5230 AGTCCCTTGTCACATCTCATTTGGTTC 5256 | | || | ||||||| || |||| || Sbjct 698 AATTCCATATCACATCACAGTTGGCTC 724 >seq1460021 Length=11980 Score = 196 bits (216), Expect = 4e-46 Identities = 186/235 (79%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 5022 GGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGC 5081 |||| || || || || | ||||||| |||| ||||| |||||||||||||| |||| Sbjct 8606 GGAGATTCGAGATAGATCAGGAACCTCAGAGCTCCAGACACTGTGCTGAGTGTTATAGAT 8547 Query 5082 TGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATCA 5141 | || |||||||||||||| ||| |||| | || | ||||||| |||||||| |||| Sbjct 8546 TACACCCTGCTGAGGAAGGAGAC--TTGGACTGATCCAAGCATGTCAGGCCTCAAGATCA 8489 Query 5142 CCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGC 5201 || ||| ||||||||||| | ||||| |||||||||||||||||| ||||| Sbjct 8488 --------GCACTGGTGGATGGAAAGAT-TATGACGTCACAGAGTGGGCTGGATTCCAGC 8438 Query 5202 GTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCACATCTCATTTGGTTC 5256 |||||| |||| || |||||||||||||| |||| |||||||||| ||||||| Sbjct 8437 ATGTGGGCATCT-CCTGGATACCCACAGAGTTCCTTATCACATCTCAGTTGGTTC 8384 >seq1224250 Length=2397 Score = 129 bits (142), Expect = 5e-26 Identities = 129/167 (77%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 5092 TGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGC 5151 |||| |||| ||| ||||| |||| |||||||||||||||| |||||||||||||| Sbjct 1603 TGAGAAAGGAGACATTTGGCCAGAAGAAAGCATGTTGGGCCTCAGGATCACCTACTTTGC 1662 Query 5152 GCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGG---ATGCCAGCGTGTGGG 5208 | ||||||| |||||| |||| |||||||||||| || | | ||| |||| Sbjct 1663 ATTAATGGATGAAAAGGTATATGTTATCACAGAGTGAACTAGTCTCTCCCACTACATGGG 1722 Query 5209 AATCTCCCCAGATACCCACAGAGTCCCTTGTCACATCTCATTTGGTT 5255 |||||||| ||| |||||||| | |||| ||||| | |||||||| Sbjct 1723 AATCTCCCTAGACACCCACAGCATTCCTTAACACATTTAATTTGGTT 1769 >seq1068018 Length=1627 Score = 127 bits (140), Expect = 2e-25 Identities = 186/257 (72%), Gaps = 12/257 (5%) Strand=Plus/Minus Query 5000 AGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGA 5059 ||| |||| || ||||||| ||| |||||| || || || | ||| || || Sbjct 325 AGCTGATGTCAAGGAAAGCTCCAGAGCTTTGAACTGCACTAGGCCCTTAAAGCTG---GA 269 Query 5060 TACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCG 5119 ||||||| | |||| || ||||| | |||||||||| |||||| || | Sbjct 268 CACTGTGCCAATGGTAACAGACTGCACCTCACTGAGGAAGGAGACTTT--GGATTAACAA 211 Query 5120 AGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATC 5179 ||||||||||| ||||| |||| || | |||| |||||| ||| ||| || ||||| || Sbjct 210 AGCATGTTGGGTCTCAAGATCA-CTTCCTTGCACTGATGAATGAAAAAGTCTATGACAT- 153 Query 5180 ACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGT 5239 ||||||||| ||||||||| | ||||||||| ||||||| |||||| || | | Sbjct 152 -CAGAGTGGGAGAGATGCCAGC--ATAAGAATCTCCCTAGATACC--CAGAGTTCCATAT 98 Query 5240 CACATCTCATTTGGTTC 5256 ||||| |||||||||| Sbjct 97 CACATGACATTTGGTTC 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39458494845504