Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq388646 387 1e-103 seq1304057 244 8e-61 seq937285 237 1e-58 seq1460021 210 2e-50 seq1068018 147 2e-31 seq1224250 132 4e-27 >seq388646 Length=392 Score = 387 bits (428), Expect = 1e-103 Identities = 265/298 (89%), Gaps = 3/298 (1%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 |||||||||| |||||||| | ||||||||| || ||||||||||||||||||||||||| Sbjct 76 CAATGAATACTATGATGTGTAGCCGATGCCAAGGGAAGCATAGGAGGTTTGAAATGGACC 135 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 |||||||||||||||||| ||||||||||||||| | |||||||| ||||||||||| | Sbjct 136 GGGAACCTAAGAGTGCCAAGTACTGTGCTGAGTGTGACAGGCTGCACCCTGCTGAGGAGG 195 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 196 GAGACTTTTGGGCTGAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCACTGATGG 255 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 | ||||||| ||||||||||||||||||||||| |||||| ||||||||||||| |||| Sbjct 256 ACAGAAAGGTCTATGATATCACAGAGTGGGCTGGGTGCCAGTGTGTGGGAATCTCTCCAG 315 Query 5205 ATACCCACAGAGTCCCTTATCAC---ATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||||||| ||| ||||| ||| ||| |||||||||| ||| | | ||| ||||| Sbjct 316 ATACCCACATAGTTCCTTACCACATTATCTCATTTGGTTCTCGGGTACTAGGCACCAG 373 >seq1304057 Length=3075 Score = 244 bits (270), Expect = 8e-61 Identities = 152/163 (93%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||||||||||| || |||||||||||||| ||||||||||||||| | ||| Sbjct 891 AGGAGGTTTGAAATGGACCGAGAGCCTAAGAGTGCCAGGTACTGTGCTGAGTGTGACAGG 832 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 831 CTGCACCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 772 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| |||||||| |||||||| ||||||||||||| Sbjct 771 ACCTACTTTGCACTGATGGACGGAAAGGTCTATGATATCACAG 729 Score = 122 bits (134), Expect = 7e-24 Identities = 96/114 (84%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 ||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| | Sbjct 643 CAGAGTGGGCTGGGTGCCAGCGTGTGGGAATCTCTCCAGATACCCACAGAGTTCCTTACC 584 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAGAGAGAGGAATGTG 5279 ||||| |||||||||| ||| | || || |||| | || | ||||| | ||| Sbjct 583 ACATCTCATTTGGTTCTCGGGTACCGGGCGCCAGTGGCC-GGCAGAGGTAAGTG 531 >seq937285 Length=1226 Score = 237 bits (262), Expect = 1e-58 Identities = 234/299 (78%), Gaps = 14/299 (5%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 |||||||||| |||||||| | | ||||| |||||| |||||| |||| ||| || Sbjct 454 CAATGAATACCATGATGTGTAGCTGATGCAGAGGAAAGTGTAGGAGAGTTGAGATGAACA 513 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCC----TGCTGAG 5080 | ||| |||||| |||||||||||||||||||||||||| | ||| | ||||||| Sbjct 514 TG-AACATAAGAGAACCAGATACTGTGCTGAGTGTAATAGGTTACATACATGCTGCTGAG 572 Query 5081 GAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTG 5140 ||||| ||||| ||||||| |||| ||||||| ||||||| |||| || ||| Sbjct 573 GAAGGAGACTT--GGGCAGATTCAAACATGTTGAGCCTCAAGATCA------TTATACTG 624 Query 5141 ATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCC 5200 ||| ||||||| | ||||| |||||||||||||| |||| ||||| |||||||||| | Sbjct 625 ATGAGTGGAAAGATCTATGACATCACAGAGTGGGCAGGATTCCAGCATGTGGGAATC-AC 683 Query 5201 CCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 | |||||| ||||| | || ||||||||| || |||| || || | ||||||||||| Sbjct 684 CTGGATACCTACAGAATTCCATATCACATCACAGTTGGCTCTTGGGTACCAGGTACCAG 742 >seq1460021 Length=11980 Score = 210 bits (232), Expect = 2e-50 Identities = 214/275 (78%), Gaps = 13/275 (5%) Strand=Plus/Minus Query 4983 GCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCA 5042 ||||| ||||| |||| | | |||| || || || || | ||||||| |||| ||| Sbjct 8629 GCAACTAATGCCTAGGAA-GTGTGGGAGATTCGAGATAGATCAGGAACCTCAGAGCTCCA 8571 Query 5043 GATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGT 5102 || |||||||||||||| |||| | || |||||||||||||| ||| |||| | || Sbjct 8570 GACACTGTGCTGAGTGTTATAGATTACACCCTGCTGAGGAAGGAGAC--TTGGACTGATC 8513 Query 5103 CAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATA 5162 ||||||||| |||||||| |||| || ||| ||||||||||| | ||||| Sbjct 8512 CAAGCATGTCAGGCCTCAAGATCA--------GCACTGGTGGATGGAAAGAT-TATGACG 8462 Query 5163 TCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTT 5222 |||||||||||||||||| ||||| |||||| |||| || |||||||||||||| |||| Sbjct 8461 TCACAGAGTGGGCTGGATTCCAGCATGTGGGCATCT-CCTGGATACCCACAGAGTTCCTT 8403 Query 5223 ATCACATCCCATTTGGTTCACGGATGCCAGGTACC 5257 |||||||| || ||||||| || | ||||| ||| Sbjct 8402 ATCACATCTCAGTTGGTTCTTGGGTACCAGGCACC 8368 >seq1068018 Length=1627 Score = 147 bits (162), Expect = 2e-31 Identities = 208/285 (73%), Gaps = 13/285 (5%) Strand=Plus/Minus Query 4989 GATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACT 5048 |||| || ||||||| ||| |||||| || || || | ||| || || ||| Sbjct 321 GATGTCAAGGAAAGCTCCAGAGCTTTGAACTGCACTAGGCCCTTAAAGCTG---GACACT 265 Query 5049 GTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCA 5108 |||| | |||| || ||||| | |||||||||| |||||| || | ||||| Sbjct 264 GTGCCAATGGTAACAGACTGCACCTCACTGAGGAAGGAGACTTT--GGATTAACAAAGCA 207 Query 5109 TGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||| ||||| ||||| | ||| || |||||| ||| ||| || ||||| |||| | Sbjct 206 TGTTGGGTCTCAAGATCACTTCCTT-GCACTGATGAATGAAAAAGTCTATGACATCA--G 150 Query 5169 AGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCACA 5228 |||||| ||||||||| | | |||||||| ||||||||| |||| || ||||||| Sbjct 149 AGTGGGAGAGATGCCAGCATAAG--AATCTCCCTAGATACCCA--GAGTTCCATATCACA 94 Query 5229 TCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAG-AGAGAG 5272 | |||||||||| | | ||||||||||| | ||| |||||| Sbjct 93 TGACATTTGGTTCTGAGGTACCAGGTACCAGTGGTCAGAAGAGAG 49 >seq1224250 Length=2397 Score = 132 bits (146), Expect = 4e-27 Identities = 130/167 (78%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 5077 TGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGC 5136 |||| |||| ||| ||||| |||| ||||||||||||||||| |||||||||||||| Sbjct 1603 TGAGAAAGGAGACATTTGGCCAGAAGAAAGCATGTTGGGCCTCAGGATCACCTACTTTGC 1662 Query 5137 GCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGG---ATGCCAGCGTGTGGG 5193 | ||||||| |||||| |||| |||||||||||| || | | ||| |||| Sbjct 1663 ATTAATGGATGAAAAGGTATATGTTATCACAGAGTGAACTAGTCTCTCCCACTACATGGG 1722 Query 5194 AATCTCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTT 5240 |||||||| ||| |||||||| | ||||| ||||| |||||||| Sbjct 1723 AATCTCCCTAGACACCCACAGCATTCCTTAACACATTTAATTTGGTT 1769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39549768383872