Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_006432.1 Length=18875 Score E Sequences producing significant alignments: (Bits) Value seq1377448 84.2 3e-12 seq1322457 80.6 3e-11 >seq1377448 Length=4179 Score = 84.2 bits (92), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 1331 GAATATGCTCCATTTGCACGTCTCCTCAATCTTTCTGGAGTCAACAACTTGGAACATGGG 1390 ||||||||||| ||||||| || | | || || ||||| ||||| |||| || | Sbjct 2461 GAATATGCTCCCTTTGCACAAATCGTGAGCCTATCAGGAGTTAACAAGCTGGAGATTGAG 2402 Query 1391 CTTTATCCACAACTCTCAGCCATTGCTTTGGGTGTTGCAACTGCCCACGGGAGCACGCTG 1450 || | || ||||| ||| |||| || | || ||||| |||||||| ||| || Sbjct 2401 CTATTCCCTCAACTGTCAACCATCGCCCTATAAGTAGCAACAGCCCACGGATGCATCCTA 2342 Query 1451 GCTGGTGTTAATGTAGGGGAGCAATATCAGCAA--CTGCGTGAGGCTGCTACTGAAGCTG 1508 |||||||| | ||||| | ||||| |||| | || | || || ||||| ||||| | Sbjct 2341 GCTGGTGTGACAGTAGGAAAACAATAACAGCTATGCTATGGGAAGCCGCTACCGAAGCAG 2282 Query 1509 AAA 1511 ||| Sbjct 2281 AAA 2279 >seq1322457 Length=3287 Score = 80.6 bits (88), Expect = 3e-11 Identities = 146/211 (69%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 1325 CATGGAGAATATGCTCCATTTGCACGTCTCCTCAATCTTTCTGGAGTCAACAACTTGGAA 1384 ||||||||||||||||| ||| | |||| ||| | ||||| |||| ||| ||||| Sbjct 1871 CATGGAGAATATGCTCCCCTTGTGCACATCCTAAATTTGTCTGGGGTCAGCAATTTGGAG 1812 Query 1385 CATGGGCTTTATCCACAACTCTCAGCCATTGCTTTGGGTGTTGCAACTGCCCACGGGAGC 1444 ||| || | ||| || || ||||| ||||||| || || || | || || || Sbjct 1811 ATTGGTCTGTTTCCCCAGCTGTCAGCGATTGCTTGAGGAACAGCCACAGGACATGGTTGC 1752 Query 1445 ACGCTGGCTGGTGTTAATGTAGGGGAGCAA-TATCAGCAACTGCGTGAGGCTGCTACTGA 1503 | ||| ||| | | ||| || ||| || ||||| |||| | || |||| ||||| Sbjct 1751 TCCTTGGTTGGCATCACTGTTGGAGAGTAATTATCAAGGACTGAGAGAACCTGCCACTGA 1692 Query 1504 AGCTGAAAAGCAACTCCAACAATATGCTGAA 1534 ||| || | | ||| || | ||||||||| Sbjct 1691 AGCAGAGAGGAGACT-AAAGAGTATGCTGAA 1662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 59262488011232