Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_014373.1 Length=18940 Score E Sequences producing significant alignments: (Bits) Value seq1322457 93.3 5e-15 seq1458509 82.4 9e-12 >seq1322457 Length=3287 Score = 93.3 bits (102), Expect = 5e-15 Identities = 136/189 (72%), Gaps = 5/189 (3%) Strand=Plus/Minus Query 1324 ACATGGAGAATATG--CCCCGTTTGCTCGTCTGCTGAATCTATCTGGGGTTAATAATCTT 1381 |||||||||||||| |||| | ||| | || || ||| | |||||||| | ||| | Sbjct 1872 ACATGGAGAATATGCTCCCCTTGTGCACATC--CTAAATTTGTCTGGGGTCAGCAATTTG 1815 Query 1382 GAGCATGGGCTTTTCCCTCAACTTTCTGCAATTGCTTTGGGAGTAGCAACTGCACATGGG 1441 ||| ||| || || || || || || || ||||||| ||| ||| || | |||||| Sbjct 1814 GAGATTGGTCTGTTTCCCCAGCTGTCAGCGATTGCTTGAGGAACAGCCACAGGACATGGT 1755 Query 1442 AGCACTCTGGCTGGAGTCAATGTAGGAGAGCAA-TACCAACAACTGCGAGAAGCAGCCAC 1500 || | ||| ||| ||| ||| |||||| || || ||| |||| ||||| | ||||| Sbjct 1754 TGCTCCTTGGTTGGCATCACTGTTGGAGAGTAATTATCAAGGACTGAGAGAACCTGCCAC 1695 Query 1501 TGAGGCCGA 1509 ||| || || Sbjct 1694 TGAAGCAGA 1686 >seq1458509 Length=10679 Score = 82.4 bits (90), Expect = 9e-12 Identities = 221/329 (67%), Gaps = 7/329 (2%) Strand=Plus/Minus Query 893 AATGCTGGACAATTTCTTTCATTTGCTAGTCTGTTTCTCCCAAAATTGGTTGTCGGAGAA 952 |||| |||| ||| | || ||| ||| |||||||||||| | | || || || ||| Sbjct 3067 AATGTGGGACCCTTTTTGTCCTTTTGTAGCTTGTTTCTCCCAACACTAGTAGTTGGGGAA 3008 Query 953 AAGGCCTGTCTG-GAGAAGGTTCAACGACAAATCCAAGTGCACGCAGAACAAGGTCTGAT 1011 ||||| ||| ||||| || || | || || | || | ||| ||||| | || Sbjct 3007 GCTGCCTG-CTGAGAGAAAGTGCAGTGTCAGTTCGTGATCCATGGAGAGCAAGGGTTAAT 2949 Query 1012 TCAATACCCGACATC-TTGGCAATCGGTGGGACATATGATGGTCATCTTC-AGACTAATG 1069 ||| || || ||| |||||| || |||| | || | || | || || || ||| Sbjct 2948 TCAGTATCC-ACAGGGTTGGCAGACGTTGGGCTTCAGGAGGATCGTTTTTTAGCCTGATG 2890 Query 1070 CGAACCAACTTC-CTGATTAAGTTCCTCCTAATACATCAAGGAATGCATATGGTTGCAGG 1128 || | | |||| || | || ||| | |||||| | ||||| || ||||| || || Sbjct 2889 AGAGCAAGCTTCACTTACAAATTTC-TGCTAATATACCAAGGTATCAATATGAAGGCTGG 2831 Query 1129 GCATGATGCTAATGATGCCGTCATTGCCAACTCTGTAGCTCAAGCTCGTTTCTCCGGATT 1188 ||||| | ||||| | ||| ||||||||||||| ||| | | || ||| || | Sbjct 2830 GCATGGCTCCAATGACATCACAATTACCAACTCTGTAGCCCAATCCCACTTTTCCAGACT 2771 Query 1189 GTTGATAGTCAAAACAGTGCTTGATCATA 1217 ||| || || |||||||| | || |||| Sbjct 2770 GTTCATTGTAAAAACAGTCTTAGAACATA 2742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 59466971593392