Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phodopus_20sungorus_20[genbank_20GCA_5F001707965.1_202016-08-18] 1,462,128 sequences; 2,003,225,912 total letters Query= NC_016144.1 Length=18927 Score E Sequences producing significant alignments: (Bits) Value seq1458509 145 9e-31 >seq1458509 Length=10679 Score = 145 bits (160), Expect = 9e-31 Identities = 417/624 (67%), Gaps = 32/624 (5%) Strand=Plus/Minus Query 927 TTTTTGTCTTTCGCAAGTTTATTTCTCCCGAAGTTAGTTGTCGGTGAACGTGCCTGCTTG 986 |||||||| || || || |||||||| | |||| || || ||| |||||||| Sbjct 3055 TTTTTGTCCTTTTGTAGCTTGTTTCTCCCAACACTAGTAGTTGGGGAAGCTGCCTGCTGA 2996 Query 987 GAAAAAGTGCAGCGGCAAATTCAAATTCATGCAGAACAAGGCTTAATCCAATATCCCACC 1046 || ||||||||| | || | || |||| ||| ||||| ||||| || ||||| Sbjct 2995 GAGAAAGTGCAGTGTCAGTTCGTGATCCATGGAGAGCAAGGGTTAATTCAGTATCCACAG 2936 Query 1047 CAATGGCAGTCCGTAGGACAT-ATGATGGTTGTATTC-AGGCTGATTCGTGTCAACTTTG 1104 |||||| | || || | | | || | | || || || ||||| | | ||| || Sbjct 2935 GGTTGGCAGAC-GTTGGGCTTCAGGAGGATCGTTTTTTAGCCTGATGAGAG-CAAGCTTC 2878 Query 1105 TCCT-CAAATTCCTCCTAGTTCACCAGGGCATGCACATGATGGCTGGGCATGATGCTAAT 1163 | | |||||| || ||| | |||| || || | |||| ||||||||||| | ||| Sbjct 2877 ACTTACAAATTTCTGCTAATATACCAAGGTATCAATATGAAGGCTGGGCATGGCTCCAAT 2818 Query 1164 GATGCAATCATTGCCAATTCAATATCCCAAACACGATTTTCAGGATTGTTAATCGTGAAG 1223 || | ||| |||| || || ||||| | | ||||| || |||| || || || Sbjct 2817 GACATCACAATTACCAACTCTGTAGCCCAATCCCACTTTTCCAGACTGTTCATTGTAAAA 2758 Query 1224 ACTGTCCTAGAGCATATTCTC-CAAAAAACTGAGGCAGGGGTCCAACTTCATCCATT--- 1279 || ||| |||| |||| | || ||| ||| || | |||| | ||||||||| Sbjct 2757 ACAGTCTTAGAACATACTTTCACAAGAAA--GAAACCTAGGTCATTCCTCATCCATTGGT 2700 Query 1280 --AGCTCGAACCTCGAAAGTCA-AAGGAGAACTCCTTGCATTCAAATCAGCACTGGAAGC 1336 | || | || ||||||| ||| |||| |||||| ||| | |||| Sbjct 2699 GAAACTGGTGCCGGTAAAGTCAGAAGTTGAAC------ATTTCAAAGTTGCA-TTGAAGG 2647 Query 1337 GTTGGCCTCACACAGA--GAGTATGCACCATTTGCACGGCTCTTGAACCTCTCTGGTGTT 1394 ||| |||| ||||| || || | ||||||||| | | || ||| | || | Sbjct 2646 GTTTTGCTCA-ACAGAAGGAATACACCCCATTTGCAAGAATTTTAAACAGTGCGGGCATC 2588 Query 1395 AATAATCTAGAACATGGCCTGTATCCTCAGCTCTCTGCCATCGCGCTTGGAGTTGCTACA 1454 || || |||||||||||| | | |||| |||||| ||| | |||||| | ||| || Sbjct 2587 AACAACCTAGAACATGGCATTTTCCCTCTGCTCTCAATCATTGTGCTTGGTGATGCCACT 2528 Query 1455 GCTCATGGTAGCACACTAGCAGGAGTTAATGTGAGTGAACAATACCAGCAACTCCGAGAG 1514 || ||||| ||||||| ||| ||| | |||| | |||||||||||||| || || Sbjct 2527 GCCTATGGTTGCACACTTGCA--AGTCACTGTGGGAGAACAATACCAGCAGCT----AAG 2474 Query 1515 GCTGCAACAGAGGCTG-AGAAACA 1537 || | ||||||||||| || |||| Sbjct 2473 GCAG-AACAGAGGCTGCAGGAACA 2451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 59426074876960