Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value SEQ46566 385 4e-103 SEQ31677 311 7e-81 SEQ52866 259 4e-65 SEQ13024 187 2e-43 SEQ44826 152 4e-33 SEQ45431 120 2e-23 SEQ38701 102 7e-18 >SEQ46566 Length=50759 Score = 385 bits (426), Expect = 4e-103 Identities = 247/268 (92%), Gaps = 1/268 (0%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 |||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1202 ATGTATAGCCGATGCCAGGGAAAGCACAGGAGGTTTGAAATGGATCGGGAACCTAAGAGT 1143 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTT-GGGC 5112 |||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| |||| Sbjct 1142 GCCAGATACTGTGCTGAGTGCAATAGGTTGCATCCTGCTGAGGAAGGAGACTTTTTGGGC 1083 Query 5113 AGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 5172 |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| || Sbjct 1082 AGAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCACTGATGGATGGAAAGGTCTA 1023 Query 5173 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5232 ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||| Sbjct 1022 CGATATCACAGAGTGGGCTGGATGTCAGTGTGTGGGAATCTCCCCAGATACCCACCGAGT 963 Query 5233 CCCTTGTCACATCTCATTTGGTTCACGG 5260 ||| ||||||||||||||||| ||| Sbjct 962 TTCTTACCACATCTCATTTGGTTCTCGG 935 >SEQ31677 Length=15381 Score = 311 bits (344), Expect = 7e-81 Identities = 237/285 (83%), Gaps = 20/285 (7%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| || | ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2015 ATGTGTAGTCCATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTGAGAGT 2074 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 |||||||| |||| |||||| ||||||||| |||||||||| ||||| |||||||||||| Sbjct 2075 GCCAGATATTGTGTTGAGTGCAATAGGCTGTATCCTGCTGATGAAGGAGACTTTTGGGCA 2134 Query 5114 GAGT--------------------CGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5153 ||| | || ||||||||||||| ||||||||||||| | Sbjct 2135 AAGTAAAAAAACAGTCTTTTGGCCCAAGACTGTTGGGCCTCAAGATCACCTACTTTGGAC 2194 Query 5154 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5213 ||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||| Sbjct 2195 TGACAGATGGAAAGGTCTATGACATCACAAAGTGGGCTGGATGCCAGCGTGTGGGAATCT 2254 Query 5214 CCCCAGATACCCACAGAGTCCCTTGTCACATCTCATTTGGTTCAC 5258 |||||||||||||||| | ||| ||||||||||||||||||| Sbjct 2255 ACCCAGATACCCACAGATTTTCTTACCACATCTCATTTGGTTCAC 2299 >SEQ52866 Length=139110 Score = 259 bits (286), Expect = 4e-65 Identities = 155/163 (95%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 47923 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGCAATAGG 47982 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct 47983 TTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 48042 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||| || |||||||||| Sbjct 48043 ACCTACTTTGCACTGATGGATGGAAAGGTCTACGATATCACAG 48085 Score = 118 bits (130), Expect = 8e-23 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| | Sbjct 48157 CAGAGTGGGCTGGATGTCAGCGTGTGGGAATCTCCCCAGATACCCACCGAGTTCCTTACC 48216 Query 5241 ACATCTCATTTGGTTCACGG 5260 |||||||||||||||| ||| Sbjct 48217 ACATCTCATTTGGTTCTCGG 48236 >SEQ13024 Length=95980 Score = 187 bits (206), Expect = 2e-43 Identities = 187/240 (78%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 5016 AGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTA 5075 || |||| || ||||| | ||| | || || ||||| ||||||||||||| ||||||| Sbjct 17640 AGTATAGAAGATTTGAGGTAGACTGTGAGCCCAAGAGAACCAGATACTGTGCAGAGTGTA 17581 Query 5076 ATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCA 5135 ||||||| |||| |||||||||||| ||| |||||||| |||| |||| ||||| Sbjct 17580 ATAGGCTACATCTTGCTGAGGAAGGAGAC--ACAGGCAGAGTTAAGCACTTTGGTCCTCA 17523 Query 5136 AAATC---ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTG 5192 | ||| | ||| ||| ||||||||||||||| | ||||| |||||||| ||||| | Sbjct 17522 AGATCAGTAGTTACAGTGCACTGATGGATGGAAAGATCTATGACATCACAGACTGGGCAG 17463 Query 5193 GATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCACATCTCATTTG 5252 ||| |||| || |||||||| | |||||||| ||||| || | |||||||||| ||| Sbjct 17462 GATTCCAGTGTTCGGGAATCT-CTTGGATACCCATAGAGTTCCATATCACATCTCACTTG 17404 >SEQ44826 Length=8880 Score = 152 bits (168), Expect = 4e-33 Identities = 193/262 (74%), Gaps = 5/262 (2%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| ||| ||||||| ||||| || |||||| |||| | ||| | |||||||| | Sbjct 7149 ATGTGTAGCTGATGCCAAGGAAAACACAGGAGGATTGACACAAACCAGAAACCTAAG--T 7092 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 | |||||||| || | |||| |||||| | ||||| || | || ||||||||| Sbjct 7091 GACAGATACTTCATGGACTATAAT--GCTGCAAGCCACTGAGAAAAGAGAATTTTGGGCA 7034 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||| | ||||||||||| |||| | |||||||||| |||||| || |||| ||| Sbjct 7033 GAGGCAAGCATGTTGGGTCTCATGGTTCCCTACTTTGCACTGATGAATTGAAAACACTAT 6974 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 | |||| |||||| || ||| || | |||||||||||| ||| ||||| |||| Sbjct 6973 GGCATCATGGAGTGGCCTTGATTGCACTGCATGGGAATCTCCCTAGACACCCAAAGAGGT 6914 Query 5234 CCTTGTCACATCTCATTTGGTT 5255 |||| ||| || | |||| ||| Sbjct 6913 CCTTATCAAAT-TTATTTTGTT 6893 >SEQ45431 Length=52095 Score = 120 bits (132), Expect = 2e-23 Identities = 163/222 (73%), Gaps = 14/222 (6%) Strand=Plus/Minus Query 5044 ACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGA 5103 || || |||||| || ||||||| || ||| || | || ||||| ||||||| || Sbjct 19436 ACTTATGAGTGCTGGACACTGTGCCAAGCCTAAGAGATTACACCCTGCGAAGGAAGGAGA 19377 Query 5104 CTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGG 5163 || || ||| ||||||||||| ||||| |||||||||| | | |||||||||| Sbjct 19376 CTGGTGT----AGTAAAGCATGTTGGGTCTCAATATCACCTACTCT--GATGATGGATGG 19323 Query 5164 AAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATAC 5223 || || ||||| || ||||||||| | ||| ||||| || |||||||||||| || Sbjct 19322 AA--GTCTATGACAT--CAGAGTGGGATAGATTCCAGC--ATGAGAATCTCCCCAG--AC 19271 Query 5224 CCACAGAGTCCCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 | ||| | || | ||||||| || ||||||| || |||| Sbjct 19270 ACTCAGCATTCCATATCACATCGCAATTGGTTCTGGGTTGCC 19229 >SEQ38701 Length=89145 Score = 102 bits (112), Expect = 7e-18 Identities = 185/264 (70%), Gaps = 9/264 (3%) Strand=Plus/Minus Query 5000 AGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGA 5059 ||| | ||||| |||| || || ||| || |||| | | ||| || |||| || Sbjct 38276 AGCTGGTGCCAAGGAA-GCCTAACAGGCCTGGGGTGGAACATGCACCCCAGTGTGCG-GA 38219 Query 5060 TACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTC- 5118 | |||||||||| | || | | || ||||| | |||| ||| || |||| | Sbjct 38218 TTCTGTGCTGAGGGCAACACAC--CACTCTGCTCGGCAAGGAGACCCGTG--CAGAAGCT 38163 Query 5119 GAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATAT 5178 |||| || ||| ||||| |||| |||| || | || ||||||||| ||||| || Sbjct 38162 GAGCGTGCTGGAACTCAAGATCATGCACTTGGCACAGACACGTGGAAAGGTCTATGACAT 38103 Query 5179 CACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTG 5238 || |||| |||||| ||||||| | ||||||||||| || |||| |||||| || | Sbjct 38102 CATGGAGTAGGCTGGCTGCCAGCACGGGGGAATCTCCCAAGTTACC--CAGAGTTCCCTA 38045 Query 5239 TCACATCTCATTTGGTTCACGGAT 5262 ||||| ||| |||||| | | ||| Sbjct 38044 TCACACCTCGTTTGGTCCGCAGAT 38021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40074879409236