Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Psammomys_20obesus_20[genbank_20GCA_5F002215935.1_202017-07-07] 96,427 sequences; 2,311,471,749 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value SEQ46566 405 4e-109 SEQ31677 329 3e-86 SEQ52866 262 3e-66 SEQ13024 190 2e-44 SEQ44826 159 3e-35 SEQ45431 145 6e-31 SEQ38701 100 2e-17 >SEQ46566 Length=50759 Score = 405 bits (448), Expect = 4e-109 Identities = 268/296 (91%), Gaps = 1/296 (0%) Strand=Plus/Minus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||||||| | ||||||| | |||||||||||||||||| ||||||||||||||||| | Sbjct 1216 CAATGAACGCTATGATGTATAGCCGATGCCAGGGAAAGCACAGGAGGTTTGAAATGGATC 1157 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 1156 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGCAATAGGTTGCATCCTGCTGAGGAAG 1097 Query 5085 GTGACTTTT-GGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATG 5143 | ||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 1096 GAGACTTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCACTGATG 1037 Query 5144 GATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCA 5203 ||||||||||| || ||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 1036 GATGGAAAGGTCTACGATATCACAGAGTGGGCTGGATGTCAGTGTGTGGGAATCTCCCCA 977 Query 5204 GATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||||||| |||| |||| |||||| |||||||||| ||| | || || ||||| Sbjct 976 GATACCCACCGAGTTTCTTACCACATCTCATTTGGTTCTCGGGTTCCCGGCACCAG 921 >SEQ31677 Length=15381 Score = 329 bits (364), Expect = 3e-86 Identities = 259/315 (82%), Gaps = 20/315 (6%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||||||| || |||||||| | | ||||||||||||||||||||||||||||||||||| Sbjct 2001 CAATGAACACTATGATGTGTAGTCCATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 2060 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 |||||||| ||||||||||||| |||| |||||| ||||||||| |||||||||| |||| Sbjct 2061 GGGAACCTGAGAGTGCCAGATATTGTGTTGAGTGCAATAGGCTGTATCCTGCTGATGAAG 2120 Query 5085 GTGACTTTTGGGCAGAGT--------------------CAAGCATGTTGGGCCTCAAAAT 5124 | |||||||||||| ||| |||| ||||||||||||| || Sbjct 2121 GAGACTTTTGGGCAAAGTAAAAAAACAGTCTTTTGGCCCAAGACTGTTGGGCCTCAAGAT 2180 Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCA 5184 ||||||||||| |||| ||||||||||| ||||| |||||| |||||||||||||||| Sbjct 2181 CACCTACTTTGGACTGACAGATGGAAAGGTCTATGACATCACAAAGTGGGCTGGATGCCA 2240 Query 5185 GCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACG 5244 |||||||||||||| |||||||||||||||| | |||| |||||| |||||||||||| Sbjct 2241 GCGTGTGGGAATCTACCCAGATACCCACAGATTTTCTTACCACATCTCATTTGGTTCACC 2300 Query 5245 GATGCCAGGTACCAG 5259 | | | || ||||| Sbjct 2301 GGTTCTTGGCACCAG 2315 >SEQ52866 Length=139110 Score = 262 bits (290), Expect = 3e-66 Identities = 156/163 (96%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 47923 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGCAATAGG 47982 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 47983 TTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 48042 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||| || |||||||||| Sbjct 48043 ACCTACTTTGCACTGATGGATGGAAAGGTCTACGATATCACAG 48085 Score = 120 bits (132), Expect = 2e-23 Identities = 83/94 (88%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| | Sbjct 48157 CAGAGTGGGCTGGATGTCAGCGTGTGGGAATCTCCCCAGATACCCACCGAGTTCCTTACC 48216 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||| ||| | || | ||||| Sbjct 48217 ACATCTCATTTGGTTCTCGGGTTCCCAGCACCAG 48250 >SEQ13024 Length=95980 Score = 190 bits (210), Expect = 2e-44 Identities = 188/240 (78%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 5001 AGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTA 5060 || |||| || ||||| | ||| | || || ||||| ||||||||||||| ||||||| Sbjct 17640 AGTATAGAAGATTTGAGGTAGACTGTGAGCCCAAGAGAACCAGATACTGTGCAGAGTGTA 17581 Query 5061 ATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCA 5120 ||||||| |||| |||||||||||| ||| |||||||| ||||| |||| ||||| Sbjct 17580 ATAGGCTACATCTTGCTGAGGAAGGAGAC--ACAGGCAGAGTTAAGCACTTTGGTCCTCA 17523 Query 5121 AAATC---ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTG 5177 | ||| | ||| ||| ||||||||||||||| | ||||| |||||||| ||||| | Sbjct 17522 AGATCAGTAGTTACAGTGCACTGATGGATGGAAAGATCTATGACATCACAGACTGGGCAG 17463 Query 5178 GATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTG 5237 ||| |||| || |||||||| | |||||||| ||||| || ||||||||| || ||| Sbjct 17462 GATTCCAGTGTTCGGGAATCT-CTTGGATACCCATAGAGTTCCATATCACATCTCACTTG 17404 >SEQ44826 Length=8880 Score = 159 bits (176), Expect = 3e-35 Identities = 189/254 (74%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 4976 ATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAG 5035 |||||||| | | ||||||| ||||| || |||||| |||| | ||| | |||||||| Sbjct 7152 ATGATGTGTAGCTGATGCCAAGGAAAACACAGGAGGATTGACACAAACCAGAAACCTAAG 7093 Query 5036 AGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGG 5095 || |||||||| || | |||| |||||| | ||||| || | || |||||| Sbjct 7092 --TGACAGATACTTCATGGACTATAAT--GCTGCAAGCCACTGAGAAAAGAGAATTTTGG 7037 Query 5096 GCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTG 5155 |||||| ||||||||||||| |||| | |||||||||| |||||| || |||| Sbjct 7036 GCAGAGGCAAGCATGTTGGGTCTCATGGTTCCCTACTTTGCACTGATGAATTGAAAACAC 6977 Query 5156 TATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGA 5215 |||| |||| |||||| || ||| || | |||||||||||| ||| ||||| ||| Sbjct 6976 TATGGCATCATGGAGTGGCCTTGATTGCACTGCATGGGAATCTCCCTAGACACCCAAAGA 6917 Query 5216 GTCCCTTATCACAT 5229 | |||||||| || Sbjct 6916 GGTCCTTATCAAAT 6903 >SEQ45431 Length=52095 Score = 145 bits (160), Expect = 6e-31 Identities = 183/245 (75%), Gaps = 15/245 (6%) Strand=Plus/Minus Query 5029 ACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGA 5088 || || |||||| || ||||||| || ||| || | || ||||| ||||||| || Sbjct 19436 ACTTATGAGTGCTGGACACTGTGCCAAGCCTAAGAGATTACACCCTGCGAAGGAAGGAGA 19377 Query 5089 CTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGG 5148 || || ||| |||||||||||| ||||| |||||||||| | | |||||||||| Sbjct 19376 CTGGTGT----AGTAAAGCATGTTGGGTCTCAATATCACCTACTCT--GATGATGGATGG 19323 Query 5149 AAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATAC 5208 || || ||||| || ||||||||| | ||| ||||| || |||||||||||| || Sbjct 19322 AA--GTCTATGACAT--CAGAGTGGGATAGATTCCAGC--ATGAGAATCTCCCCAG--AC 19271 Query 5209 CCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAG-A 5267 | ||| | || ||||||||| || ||||||| || ||||||| ||||| | ||| | Sbjct 19270 ACTCAGCATTCCATATCACATCGCAATTGGTTCTGGGTTGCCAGGGACCAGTGGTCAGAA 19211 Query 5268 GAGAG 5272 ||||| Sbjct 19210 GAGAG 19206 >SEQ38701 Length=89145 Score = 100 bits (110), Expect = 2e-17 Identities = 189/271 (70%), Gaps = 9/271 (3%) Strand=Plus/Minus Query 4991 TGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGT 5050 ||||| |||| || || ||| || |||| | | ||| || |||| ||| |||| Sbjct 38270 TGCCAAGGAA-GCCTAACAGGCCTGGGGTGGAACATGCACCCCAGTGTGCG-GATTCTGT 38213 Query 5051 GCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCA-AGCAT 5109 |||||| | || | | || ||||| | |||| ||| || |||| | ||| | Sbjct 38212 GCTGAGGGCAACACAC--CACTCTGCTCGGCAAGGAGACCCGTG--CAGAAGCTGAGCGT 38157 Query 5110 GTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGA 5169 | ||| ||||| |||| |||| || | || ||||||||| ||||| |||| || Sbjct 38156 GCTGGAACTCAAGATCATGCACTTGGCACAGACACGTGGAAAGGTCTATGACATCATGGA 38097 Query 5170 GTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCACAT 5229 || |||||| ||||||| | ||||||||||| || |||| |||||| || ||||||| Sbjct 38096 GTAGGCTGGCTGCCAGCACGGGGGAATCTCCCAAGTTACC--CAGAGTTCCCTATCACAC 38039 Query 5230 CCCATTTGGTTCACGGATGCCAGGTACCAGC 5260 | | |||||| | | ||| |||| | |||| Sbjct 38038 CTCGTTTGGTCCGCAGATAGCAGGCAGCAGC 38008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40167578739448