Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq166 257 1e-64 seq219 250 2e-62 seq129 250 2e-62 seq31 205 7e-49 seq1 174 1e-39 seq243 140 3e-29 seq312 123 2e-24 >seq166 Length=122095297 Score = 257 bits (284), Expect = 1e-64 Identities = 234/298 (79%), Gaps = 14/298 (5%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 |||||||||| ||||| |||| ||||||| |||||| ||||| ||||||||| |||| Sbjct 50795645 CAATGAATACTATGATATGCAGTAGATGCCAAGGAAAGAATAGGGGGTTTGAAAAGGACT 50795704 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 ||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||| Sbjct 50795705 GGGAACCCAAGAGTGCCAGATACTGTGCTGACTGTAACAGGCTTCATCCTGCTGAGGAAA 50795764 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | | ||| |||| ||||||||| |||||||||||||| ||| ||| ||||| ||||| | Sbjct 50795765 GAGTCTTCTGGGTAGAGTCAAGGATGTTGGGCCTCAAGATCTCCTGTTTTGCACTGATCG 50795824 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 | ||| |||||||| |||||||||||| ||||||| ||| |||| Sbjct 50795825 ACTGAACGGTGTATGTCATCACAGAGTGGCCTGGATGTCAG--------------TCCAG 50795870 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGA 5262 |||| ||||| | ||||| ||| || |||||| ||| || | | || ||||| || Sbjct 50795871 ATACTCACAGGATTCCTTACCACTTCTCATTTGTTTCTTGGGTACTGGGCACCAGTGA 50795928 >seq219 Length=114033958 Score = 250 bits (276), Expect = 2e-62 Identities = 153/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct 21032635 AGGAGGTTTGAAATGGACCGGGAACCCAAGAGTGCCAGATACTGTGCCGAGTGTAACAGG 21032694 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| Sbjct 21032695 TTGCATCCTGCTGAGGAAGGAGACTTCTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 21032754 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||| ||||||||||| ||||||| Sbjct 21032755 ACCTACTTTGCACTGATGGATGGGAAGGTGTATGACATCACAG 21032797 Score = 134 bits (148), Expect = 1e-27 Identities = 89/99 (90%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||| | Sbjct 21032883 CAGAGTGGGCTGGATGCCAGCGTGTGGGCATCTCCCCAGATACCCACCGAGTTCCTTACC 21032942 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACC 5264 ||||| |||||||||| ||| | ||||| ||||||| || Sbjct 21032943 ACATCTCATTTGGTTCTCGGGTACCAGGCACCAGCGGCC 21032981 >seq129 Length=145729302 Score = 250 bits (276), Expect = 2e-62 Identities = 153/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct 3240837 AGGAGGTTTGAAATGGACCGGGAACCCAAGAGTGCCAGATACTGTGCCGAGTGTAACAGG 3240896 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| Sbjct 3240897 TTGCATCCTGCTGAGGAAGGAGACTTCTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 3240956 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||| ||||||||||| ||||||| Sbjct 3240957 ACCTACTTTGCACTGATGGATGGGAAGGTGTATGACATCACAG 3240999 Score = 134 bits (148), Expect = 1e-27 Identities = 89/99 (90%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||| | Sbjct 3241085 CAGAGTGGGCTGGATGCCAGCGTGTGGGCATCTCCCCAGATACCCACCGAGTTCCTTACC 3241144 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACC 5264 ||||| |||||||||| ||| | ||||| ||||||| || Sbjct 3241145 ACATCTCATTTGGTTCTCGGGTACCAGGCACCAGCGGCC 3241183 >seq31 Length=266435125 Score = 205 bits (226), Expect = 7e-49 Identities = 225/295 (76%), Gaps = 6/295 (2%) Strand=Plus/Plus Query 4967 ATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGG 5026 |||||||| |||| || | | ||||| |||||||| |||||| ||||| | |||| | Sbjct 31414362 ATGAATACTATGAGGTATAGCAGATGCAAGGGAAAGTGTAGGAGATTTGAGTTAGACCAG 31414421 Query 5027 GAACCTAAGA--GTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 |||||||| | | ||| |||| | |||||||||| |||||||||| ||| ||||||||| Sbjct 31414422 GAACCTAACACAGGGCCTGATATTCTGCTGAGTGTGATAGGCTGCACCCTACTGAGGAAG 31414481 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | |||| |||||| ||| |||||||| ||||||| |||| |||||||| | | Sbjct 31414482 GAGACTCA--GGCAGATTCATGCATGTTGAGCCTCAAGATCAGTTACTTTGCTCCAGCAG 31414539 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 | ||||| | ||||| ||||||||||||| ||| |||| || | | ||||| | Sbjct 31414540 ACAGAAAGAT-TATGACATCACAGAGTGGGTGAGATTCCAGTATGCGAGCCTCTCCTG-G 31414597 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||||||||||| || ||||| ||| || |||||| || | |||||||||| Sbjct 31414598 ATACCCACAGAGTTCCATATCATATCTCAGGTGGTTCTTGGGTATCAGGTACCAG 31414652 >seq1 Length=282763074 Score = 174 bits (192), Expect = 1e-39 Identities = 206/276 (75%), Gaps = 5/276 (2%) Strand=Plus/Minus Query 4979 ATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5038 ||||| | || || | | |||||| | ||| | |||| || |||| |||| ||||||| Sbjct 153043105 ATGTGTAGCCAATACAAAGGAAAGTAC-GGAAGATTGAGATAGACCAGGAAACTAAGAGA 153043047 Query 5039 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5098 |||||||||| |||| |||||||||||| | ||||||||||||||| ||||| || Sbjct 153043046 TCCAGATACTGCGCTGTGTGTAATAGGCTACGTCCTGCTGAGGAAGGAGACTT---GGGT 153042990 Query 5099 GAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5158 || |||||| |||||| ||||||| ||| ||| || ||||||||||| ||| ||| Sbjct 153042989 GATTCAAGCCTGTTGGACCTCAAAGTCAGTTACACTGTACTGATGGATGGTAAGAGCTAT 153042930 Query 5159 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5218 || |||||||||||||| ||| ||||| || | || || | ||||||| |||| Sbjct 153042929 GACATCACAGAGTGGGCGGGACTCCAGCATGAAGCAACCT-CTTGGATACCCGTGGAGTT 153042871 Query 5219 CCTTATCACATCCCATTTGGTTCACGGATGCCAGGT 5254 || ||||| | || |||| || || | | |||| Sbjct 153042870 CCACGTCACACCTCACTTGGCTCTTGGGTACTAGGT 153042835 >seq243 Length=111246239 Score = 140 bits (154), Expect = 3e-29 Identities = 186/254 (73%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 4989 GATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACT 5048 |||||||| ||||| ||| || | || | | || |||||||||| || | || Sbjct 103491341 GATGCCAG--AAAGCCTAGCGGGCTCGAGGTTGCCCAAGAACCTAAGAATGTGGTCT-CT 103491285 Query 5049 GTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTC-AAGC 5107 | |||||||| ||||||||| ||||| ||||||| || | | |||| | |||| Sbjct 103491284 GAGCTGAGTGCAATAGGCTGGGCTCTGCTCAGGAAGGAGAACCTGGATCAGAAACTAAGC 103491225 Query 5108 ATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACA 5167 || || || | | ||||| |||| |||| |||||| |||||||| | ||| |||| | Sbjct 103491224 CTGCTGAACCCCGAGATCACTCACTTGGCGCAGATGGACGGAAAGGTCTGTGACATCATA 103491165 Query 5168 GAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCAC 5227 |||| |||||||||||||| ||||||||||||| || |||| |||||| || |||| Sbjct 103491164 GAGTAGGCTGGATGCCAGCACGTGGGAATCTCCCAAGTTACC--CAGAGTTCCCTATCGA 103491107 Query 5228 ATCCCATTTGGTTC 5241 | ||||| |||| Sbjct 103491106 GCCTCATTTAGTTC 103491093 >seq312 Length=159970021 Score = 123 bits (136), Expect = 2e-24 Identities = 128/165 (78%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 5076 CTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTG 5135 |||| |||| | |||||||||||||| | ||||||||||| |||| | |||||| | Sbjct 99351606 CTGAAAAAGGAGGCTTTTGGGCAGAGTTA-GCATGTTGGGC-TCAAGGTACCCTACTCCG 99351663 Query 5136 CGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAA 5195 | |||||| ||| |||| | || | |||| || |||| ||||| | | ||||||||| Sbjct 99351664 CACTGATGAATGAAAAGCTCTACGGCATCAGGGAATGGGTTGGATTCTACTGTGTGGGAA 99351723 Query 5196 TCTCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTT 5240 |||||| ||| || | ||||| ||||||||||| ||||||||| Sbjct 99351724 TCTCCCTAGACACTGAGAGAGTTCCTTATCACATTTCATTTGGTT 99351768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40210767980920