Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq236 246 2e-61 >seq236 Length=3250300 Score = 246 bits (272), Expect = 2e-61 Identities = 153/164 (93%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1305800 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAAGAG 1305741 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 |||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| || Sbjct 1305740 ACTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTTGGCCTCAAGAT 1305681 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 |||||| ||||| ||||||||||| || |||||||| ||||||| Sbjct 1305680 CACCTATTTTGCACTGATGGATGGGAAAGTGTATGACATCACAG 1305637 Score = 129 bits (142), Expect = 5e-26 Identities = 79/84 (94%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 5182 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCA 5241 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 1305556 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATCA 1305497 Query 5242 CATCTCATTTGGTTCACGGATGCC 5265 |||||| |||||||| ||||| || Sbjct 1305496 CATCTCCTTTGGTTCTCGGATTCC 1305473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40113169513452