Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ailurus_20fulgens_20styani_20[genbank_20GCA_5F002007465.1_202017-02- 28] 11,589 sequences; 2,342,939,051 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq236 251 6e-63 >seq236 Length=3250300 Score = 251 bits (278), Expect = 6e-63 Identities = 154/164 (94%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1305800 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAAGAG 1305741 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || Sbjct 1305740 ACTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTTGGCCTCAAGAT 1305681 Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 |||||| ||||| ||||||||||| || |||||||| ||||||| Sbjct 1305680 CACCTATTTTGCACTGATGGATGGGAAAGTGTATGACATCACAG 1305637 Score = 141 bits (156), Expect = 7e-30 Identities = 87/93 (94%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 5167 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCA 5226 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1305556 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATCA 1305497 Query 5227 CATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||| | |||||||| ||||| ||||| ||||| Sbjct 1305496 CATCTCCTTTGGTTCTCGGATTCCAGGCACCAG 1305464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40205957414536