Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq62190 286 3e-73 seq55952 149 5e-32 >seq62190 Length=1113263 Score = 286 bits (316), Expect = 3e-73 Identities = 161/163 (99%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 263587 AGGAGGTTCGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 263528 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 263527 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 263468 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 263467 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 263425 Score = 149 bits (164), Expect = 5e-32 Identities = 84/85 (99%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 263345 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 263286 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||||||||||||| Sbjct 263285 ACATCTCATTTGGTTCACGGATGCC 263261 >seq55952 Length=287 Score = 149 bits (164), Expect = 5e-32 Identities = 84/85 (99%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 107 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 166 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||||||||||||| Sbjct 167 ACATCTCATTTGGTTCACGGATGCC 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40083503009760