Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ammotragus_20lervia_20[genbank_20GCA_5F002201775.1_202017-06-20] 77,320 sequences; 2,650,836,958 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq13052 89.7 3e-15 seq6873 80.6 2e-12 seq5438 77.0 2e-11 >seq13052 Length=681615 Score = 89.7 bits (98), Expect = 3e-15 Identities = 77/90 (86%), Gaps = 4/90 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||| |||||||| | ||||| |||||||| ||||||| | ||||||| |||||||||||| Sbjct 283964 CTGTCCAGGCATGGATCACCGTCTTTCGGCTCCTAACACGTGCGCTCATGCTCCACCTCC 284023 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGG 926 ||| ||||| |||| || || ||||||||| Sbjct 284024 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGG 284049 >seq6873 Length=2177 Score = 80.6 bits (88), Expect = 2e-12 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||| ||||||||| | || | | |||||||||||| Sbjct 529 CTGCCCAGGCATAGTTCACCATCTTTCAGGTCCTAACACGTGTGACCATGCTCCACCTCC 470 Query 897 CC 898 || Sbjct 469 CC 468 >seq5438 Length=1959 Score = 77.0 bits (84), Expect = 2e-11 Identities = 62/74 (84%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||| |||||||||||||||||||||| ||||||||| | || | | ||||||| |||| Sbjct 426 CTGCGCAGGCATAGTTCACCATCTTTCAGGTCCTAACACGTGTGACCATGCTCCATCTCC 367 Query 897 CCGACGCGGTCGGG 910 || ||||| |||| Sbjct 366 CCAGCGCGG-CGGG 354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2858518905360