Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq1342 426 1e-115 seq2 417 7e-113 seq1153 410 1e-110 seq2230 271 6e-69 >seq1342 Length=4583377 Score = 426 bits (472), Expect = 1e-115 Identities = 259/273 (95%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1063578 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTGAGAGT 1063637 Query 5054 GCCAGATACTGTGCTGAGT-GTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGC 5112 ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 1063638 GCCAGATACTGTGCTGAGTAGTAATAGGCTGCATCCTGCTGAGGAAGGAGACTTTTGGGC 1063697 Query 5113 AGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 5172 |||||| |||||||||| |||||| |||||||||||||| |||||||||||||||||||| Sbjct 1063698 AGAGTCAAGCATGTTGGACCTCAAGATCACCTACTTTGCTCTGATGGATGGAAAGGTGTA 1063757 Query 5173 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5232 ||| |||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| Sbjct 1063758 TGACATCACAGAGTGGGCAGGATGCCAGCATGTGGGAATCTCCCCAGATACCCGCAGAGT 1063817 Query 5233 CCCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 ||| | |||||||||||||||||||||||||| Sbjct 1063818 CCCCTACCACATCTCATTTGGTTCACGGATGCC 1063850 >seq2 Length=27433829 Score = 417 bits (462), Expect = 7e-113 Identities = 258/273 (95%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGC-ATAGGAGGTTTGAAATGGACCGGGAACCTAAGAG 5052 |||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 19926086 ATGTGCAGCCAATGCCAGAGAAAGCCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAG 19926145 Query 5053 TGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGC 5112 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 19926146 TGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGAGAATTTTGGGC 19926205 Query 5113 AGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 5172 ||||| ||||||||||||||||| || ||||||||| |||||||||||||||||||||| Sbjct 19926206 TGAGTCAAGCATGTTGGGCCTCAAGATTACCTACTTT-CGCTGATGGATGGAAAGGTGTA 19926264 Query 5173 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5232 ||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 19926265 TGACATCATAGAGTGGGCTGGATGCCAGCATGTGGGAATCTCCCCAGATACCCACAGAGT 19926324 Query 5233 CCCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 ||| | ||||||||||||||||||||||||||| Sbjct 19926325 CCCCTATCACATCTCATTTGGTTCACGGATGCC 19926357 >seq1153 Length=5201046 Score = 410 bits (454), Expect = 1e-110 Identities = 254/272 (93%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 4062250 ATGTGTGGCCGATGCCAGGGAAAGCACAGGAGGTTTGAAATGGACCGGGAACCTAGGAGT 4062191 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 4062190 GCCAGCTACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAGGAGACTTTTGGGCC 4062131 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 4062130 GAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCGCTGATGGAGAGAAAGGTGTAT 4062071 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 4062070 GACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCGCAGAGCC 4062011 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || | ||||||||||||||||||||||| ||| Sbjct 4062010 CCCTATCACATCTCATTTGGTTCACGGAGGCC 4061979 >seq2230 Length=20112346 Score = 271 bits (300), Expect = 6e-69 Identities = 158/163 (97%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 9334521 AGGAGGTTTGAAATGGATCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 9334462 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct 9334461 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 9334402 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 9334401 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 9334359 Score = 145 bits (160), Expect = 6e-31 Identities = 83/85 (98%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 9334282 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 9334223 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||||||||||||| Sbjct 9334222 ACATCTCATTTGGTTCACGGATGCC 9334198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40113536446368