Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20acutorostrata_20scammoni_20[refseq_20GCF_5F000493695. 1_202013-10-31] 10,776 sequences; 2,431,687,698 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq1342 461 6e-126 seq2 455 3e-124 seq1153 444 5e-121 seq2230 277 1e-70 >seq1342 Length=4583377 Score = 461 bits (510), Expect = 6e-126 Identities = 284/302 (94%), Gaps = 1/302 (0%) Strand=Plus/Plus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018 |||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 1063558 AAGAAGCAATGAATACTATGATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 1063617 Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGT-GTAATAGGCTGCATCCTGCT 5077 |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1063618 TGGACCGGGAACCTGAGAGTGCCAGATACTGTGCTGAGTAGTAATAGGCTGCATCCTGCT 1063677 Query 5078 GAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCG 5137 |||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 1063678 GAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGACCTCAAGATCACCTACTTTGCT 1063737 Query 5138 CTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATC 5197 ||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||| Sbjct 1063738 CTGATGGATGGAAAGGTGTATGACATCACAGAGTGGGCAGGATGCCAGCATGTGGGAATC 1063797 Query 5198 TCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACC 5257 ||||||||||||| ||||||||| || |||||| |||||||||||||||||||||| ||| Sbjct 1063798 TCCCCAGATACCCGCAGAGTCCCCTACCACATCTCATTTGGTTCACGGATGCCAGGCACC 1063857 Query 5258 AG 5259 || Sbjct 1063858 AG 1063859 >seq2 Length=27433829 Score = 455 bits (504), Expect = 3e-124 Identities = 293/316 (93%), Gaps = 3/316 (1%) Strand=Plus/Plus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGC-ATAGGAGGTTTGAA 5017 |||| |||||||||| |||||||||| || ||||||| |||||| |||||||||||||| Sbjct 19926066 AAGAAGCAATGAATACTATGATGTGCAGCCAATGCCAGAGAAAGCCATAGGAGGTTTGAA 19926125 Query 5018 ATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCT 5077 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19926126 ATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCT 19926185 Query 5078 GAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCG 5137 |||||||| || |||||||| ||||||||||||||||||||||| || ||||||||| || Sbjct 19926186 GAGGAAGGAGAATTTTGGGCTGAGTCAAGCATGTTGGGCCTCAAGATTACCTACTTT-CG 19926244 Query 5138 CTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATC 5197 ||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||| Sbjct 19926245 CTGATGGATGGAAAGGTGTATGACATCATAGAGTGGGCTGGATGCCAGCATGTGGGAATC 19926304 Query 5198 TCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACC 5257 ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||| Sbjct 19926305 TCCCCAGATACCCACAGAGTCCCCTATCACATCTCATTTGGTTCACGGATGCCAGGCACC 19926364 Query 5258 AGCGACCAG-AGAGAG 5272 || | ||| |||||| Sbjct 19926365 AGTAAGCAGCAGAGAG 19926380 >seq1153 Length=5201046 Score = 444 bits (492), Expect = 5e-121 Identities = 279/301 (93%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018 |||| |||||||||| |||||||| |||||||||||||||||| ||||||||||||| Sbjct 4062270 AAGAAGCAATGAATACTATGATGTGTGGCCGATGCCAGGGAAAGCACAGGAGGTTTGAAA 4062211 Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078 ||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 4062210 TGGACCGGGAACCTAGGAGTGCCAGCTACTGTGCTGAGTGTAACAGGCTGCATCCTGCTG 4062151 Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5138 ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 4062150 AGGAAGGAGACTTTTGGGCCGAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCGC 4062091 Query 5139 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5198 ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 4062090 TGATGGAGAGAAAGGTGTATGACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 4062031 Query 5199 CCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCA 5258 |||||||||||| ||||| ||| ||||||||| ||||||||||||||| |||||| |||| Sbjct 4062030 CCCCAGATACCCGCAGAGCCCCCTATCACATCTCATTTGGTTCACGGAGGCCAGGCACCA 4061971 Query 5259 G 5259 | Sbjct 4061970 G 4061970 >seq2230 Length=20112346 Score = 277 bits (306), Expect = 1e-70 Identities = 159/163 (98%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 9334521 AGGAGGTTTGAAATGGATCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 9334462 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 9334461 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 9334402 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 9334401 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 9334359 Score = 156 bits (172), Expect = 3e-34 Identities = 91/94 (97%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 9334282 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 9334223 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||||||||||||||| ||||| Sbjct 9334222 ACATCTCATTTGGTTCACGGATGCCAGGCACCAG 9334189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40206325196224