Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq357920 414 8e-112 seq335875 414 8e-112 seq181749 414 8e-112 seq392651 271 6e-69 >seq357920 Length=28555 Score = 414 bits (458), Expect = 8e-112 Identities = 257/273 (94%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 75 ATGTGCAGCCAATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTGAGAGT 134 Query 5054 GCCAGATACTGTGCTGAGT-GTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGC 5112 ||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||| Sbjct 135 GCCAGATACTGTGCTGAGTAGTAATAGGCTGCATCCTGCTGAGGAAGGAGA-TTTTGGGC 193 Query 5113 AGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 5172 |||||| |||||||||| |||||| ||||||| ||||||||||||||| ||||||||||| Sbjct 194 AGAGTCAAGCATGTTGGACCTCAAGATCACCTGCTTTGCGCTGATGGAAGGAAAGGTGTA 253 Query 5173 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5232 ||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 254 TGACATCACAGAGTGGGCGGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCGCAGAGT 313 Query 5233 CCCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 ||| | |||||||||||||||||||||||| || Sbjct 314 CCCCTATCACATCTCATTTGGTTCACGGATACC 346 >seq335875 Length=22866 Score = 414 bits (458), Expect = 8e-112 Identities = 255/272 (94%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 14911 ATGTGTGGCCGATGCCAGGGAAAGCACAGGAGGTTTGAAATGGACCGGGAACCTAGGAGT 14970 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 14971 GCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAGGAGACTTTTGGGCC 15030 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 15031 GAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCGCTGATGGAGAGAAAGGTGTAT 15090 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 15091 GACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCGCAGAGCC 15150 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || | ||||||||||||||||||||||| ||| Sbjct 15151 CCCTATCACATCTCATTTGGTTCACGGAGGCC 15182 >seq181749 Length=14780 Score = 414 bits (458), Expect = 8e-112 Identities = 257/273 (94%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGC-ATAGGAGGTTTGAAATGGACCGGGAACCTAAGAG 5052 |||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 3173 ATGTGCAGCCAATGCCAGAGAAAGCCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAG 3232 Query 5053 TGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGC 5112 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 3233 TGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGAGAATTTTGGGC 3292 Query 5113 AGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 5172 ||||| ||||||||||||||||| || ||||||||| |||||||||||||||||||||| Sbjct 3293 TGAGTCAAGCATGTTGGGCCTCAAGATTACCTACTTT-CGCTGATGGATGGAAAGGTGTA 3351 Query 5173 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5232 ||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3352 TGACATCATAGAGTGGGCTGGATGCCAGCATGTGGGAATCTCCCCAGATACCCACAGAGT 3411 Query 5233 CCCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 ||| | ||||||||||||||||||| ||||||| Sbjct 3412 CCCCTATCACATCTCATTTGGTTCATGGATGCC 3444 >seq392651 Length=12285 Score = 271 bits (300), Expect = 6e-69 Identities = 158/163 (97%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 5464 AGGAGGTTTGAAATGGATCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5523 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct 5524 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 5583 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 5584 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 5626 Score = 145 bits (160), Expect = 6e-31 Identities = 83/85 (98%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 5703 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 5762 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||||||||||||| Sbjct 5763 ACATCTCATTTGGTTCACGGATGCC 5787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39928188836592