Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03-
18] 421,444 sequences; 2,234,641,557 total letters
Query= NC_003678.1
Length=12602
Score E
Sequences producing significant alignments: (Bits) Value
seq335875 448 4e-122
seq181749 448 4e-122
seq357920 443 2e-120
seq392651 277 1e-70
>seq335875
Length=22866
Score = 448 bits (496), Expect = 4e-122
Identities = 280/301 (93%), Gaps = 0/301 (0%)
Strand=Plus/Plus
Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018
|||| |||||||||| |||||||| |||||||||||||||||| |||||||||||||
Sbjct 14891 AAGAAGCAATGAATACTATGATGTGTGGCCGATGCCAGGGAAAGCACAGGAGGTTTGAAA 14950
Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 14951 TGGACCGGGAACCTAGGAGTGCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTG 15010
Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5138
||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 15011 AGGAAGGAGACTTTTGGGCCGAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCGC 15070
Query 5139 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5198
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 15071 TGATGGAGAGAAAGGTGTATGACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 15130
Query 5199 CCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCA 5258
|||||||||||| ||||| ||| ||||||||| ||||||||||||||| |||||| ||||
Sbjct 15131 CCCCAGATACCCGCAGAGCCCCCTATCACATCTCATTTGGTTCACGGAGGCCAGGCACCA 15190
Query 5259 G 5259
|
Sbjct 15191 G 15191
>seq181749
Length=14780
Score = 448 bits (496), Expect = 4e-122
Identities = 282/302 (93%), Gaps = 2/302 (1%)
Strand=Plus/Plus
Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGC-ATAGGAGGTTTGAA 5017
|||| |||||||||| |||||||||| || ||||||| |||||| ||||||||||||||
Sbjct 3153 AAGAAGCAATGAATACTATGATGTGCAGCCAATGCCAGAGAAAGCCATAGGAGGTTTGAA 3212
Query 5018 ATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCT 5077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3213 ATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCT 3272
Query 5078 GAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCG 5137
|||||||| || |||||||| ||||||||||||||||||||||| || ||||||||| ||
Sbjct 3273 GAGGAAGGAGAATTTTGGGCTGAGTCAAGCATGTTGGGCCTCAAGATTACCTACTTT-CG 3331
Query 5138 CTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATC 5197
||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||
Sbjct 3332 CTGATGGATGGAAAGGTGTATGACATCATAGAGTGGGCTGGATGCCAGCATGTGGGAATC 3391
Query 5198 TCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACC 5257
||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||| |||
Sbjct 3392 TCCCCAGATACCCACAGAGTCCCCTATCACATCTCATTTGGTTCATGGATGCCAGGCACC 3451
Query 5258 AG 5259
||
Sbjct 3452 AG 3453
>seq357920
Length=28555
Score = 443 bits (490), Expect = 2e-120
Identities = 281/302 (93%), Gaps = 2/302 (1%)
Strand=Plus/Plus
Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018
|||| |||||||||| || ||||||| || |||||||||||||||||||||||||||||
Sbjct 55 AAGAAGCAATGAATACTATAATGTGCAGCCAATGCCAGGGAAAGCATAGGAGGTTTGAAA 114
Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGT-GTAATAGGCTGCATCCTGCT 5077
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 115 TGGACCGGGAACCTGAGAGTGCCAGATACTGTGCTGAGTAGTAATAGGCTGCATCCTGCT 174
Query 5078 GAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCG 5137
|||||||| || ||||||||||||||||||||||||| |||||| ||||||| |||||||
Sbjct 175 GAGGAAGGAGA-TTTTGGGCAGAGTCAAGCATGTTGGACCTCAAGATCACCTGCTTTGCG 233
Query 5138 CTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATC 5197
|||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 234 CTGATGGAAGGAAAGGTGTATGACATCACAGAGTGGGCGGGATGCCAGCGTGTGGGAATC 293
Query 5198 TCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACC 5257
||||||||||||| ||||||||| ||||||||| |||||||||||||||| ||||| |||
Sbjct 294 TCCCCAGATACCCGCAGAGTCCCCTATCACATCTCATTTGGTTCACGGATACCAGGCACC 353
Query 5258 AG 5259
||
Sbjct 354 AG 355
>seq392651
Length=12285
Score = 277 bits (306), Expect = 1e-70
Identities = 159/163 (98%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 5464 AGGAGGTTTGAAATGGATCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5523
Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 5524 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 5583
Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168
||||||||||||||||||||||||||||||||||| |||||||
Sbjct 5584 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 5626
Score = 159 bits (176), Expect = 3e-35
Identities = 93/96 (97%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 5703 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 5762
Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAGCG 5261
||||| |||||||||||||||||||||| |||||||
Sbjct 5763 ACATCTCATTTGGTTCACGGATGCCAGGCACCAGCG 5798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40020548849056
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |