Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Balaenoptera_20bonaerensis_20[genbank_20GCA_5F000978805.1_202015-03- 18] 421,444 sequences; 2,234,641,557 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq335875 448 4e-122 seq181749 448 4e-122 seq357920 443 2e-120 seq392651 277 1e-70 >seq335875 Length=22866 Score = 448 bits (496), Expect = 4e-122 Identities = 280/301 (93%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018 |||| |||||||||| |||||||| |||||||||||||||||| ||||||||||||| Sbjct 14891 AAGAAGCAATGAATACTATGATGTGTGGCCGATGCCAGGGAAAGCACAGGAGGTTTGAAA 14950 Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078 ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct 14951 TGGACCGGGAACCTAGGAGTGCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTG 15010 Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5138 ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 15011 AGGAAGGAGACTTTTGGGCCGAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCGC 15070 Query 5139 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5198 ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 15071 TGATGGAGAGAAAGGTGTATGACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 15130 Query 5199 CCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCA 5258 |||||||||||| ||||| ||| ||||||||| ||||||||||||||| |||||| |||| Sbjct 15131 CCCCAGATACCCGCAGAGCCCCCTATCACATCTCATTTGGTTCACGGAGGCCAGGCACCA 15190 Query 5259 G 5259 | Sbjct 15191 G 15191 >seq181749 Length=14780 Score = 448 bits (496), Expect = 4e-122 Identities = 282/302 (93%), Gaps = 2/302 (1%) Strand=Plus/Plus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGC-ATAGGAGGTTTGAA 5017 |||| |||||||||| |||||||||| || ||||||| |||||| |||||||||||||| Sbjct 3153 AAGAAGCAATGAATACTATGATGTGCAGCCAATGCCAGAGAAAGCCATAGGAGGTTTGAA 3212 Query 5018 ATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCT 5077 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3213 ATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCT 3272 Query 5078 GAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCG 5137 |||||||| || |||||||| ||||||||||||||||||||||| || ||||||||| || Sbjct 3273 GAGGAAGGAGAATTTTGGGCTGAGTCAAGCATGTTGGGCCTCAAGATTACCTACTTT-CG 3331 Query 5138 CTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATC 5197 ||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||| Sbjct 3332 CTGATGGATGGAAAGGTGTATGACATCATAGAGTGGGCTGGATGCCAGCATGTGGGAATC 3391 Query 5198 TCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACC 5257 ||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||| ||| Sbjct 3392 TCCCCAGATACCCACAGAGTCCCCTATCACATCTCATTTGGTTCATGGATGCCAGGCACC 3451 Query 5258 AG 5259 || Sbjct 3452 AG 3453 >seq357920 Length=28555 Score = 443 bits (490), Expect = 2e-120 Identities = 281/302 (93%), Gaps = 2/302 (1%) Strand=Plus/Plus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018 |||| |||||||||| || ||||||| || ||||||||||||||||||||||||||||| Sbjct 55 AAGAAGCAATGAATACTATAATGTGCAGCCAATGCCAGGGAAAGCATAGGAGGTTTGAAA 114 Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGT-GTAATAGGCTGCATCCTGCT 5077 |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 115 TGGACCGGGAACCTGAGAGTGCCAGATACTGTGCTGAGTAGTAATAGGCTGCATCCTGCT 174 Query 5078 GAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCG 5137 |||||||| || ||||||||||||||||||||||||| |||||| ||||||| ||||||| Sbjct 175 GAGGAAGGAGA-TTTTGGGCAGAGTCAAGCATGTTGGACCTCAAGATCACCTGCTTTGCG 233 Query 5138 CTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATC 5197 |||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 234 CTGATGGAAGGAAAGGTGTATGACATCACAGAGTGGGCGGGATGCCAGCGTGTGGGAATC 293 Query 5198 TCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACC 5257 ||||||||||||| ||||||||| ||||||||| |||||||||||||||| ||||| ||| Sbjct 294 TCCCCAGATACCCGCAGAGTCCCCTATCACATCTCATTTGGTTCACGGATACCAGGCACC 353 Query 5258 AG 5259 || Sbjct 354 AG 355 >seq392651 Length=12285 Score = 277 bits (306), Expect = 1e-70 Identities = 159/163 (98%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 5464 AGGAGGTTTGAAATGGATCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5523 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 5524 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 5583 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 5584 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 5626 Score = 159 bits (176), Expect = 3e-35 Identities = 93/96 (97%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 5703 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 5762 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAGCG 5261 ||||| |||||||||||||||||||||| ||||||| Sbjct 5763 ACATCTCATTTGGTTCACGGATGCCAGGCACCAGCG 5798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40020548849056