Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20indicus_20[refseq_20GCF_5F000247795.1_202014-11-25] 32 sequences; 2,673,965,444 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq5 295 5e-76 >seq5 Length=125642736 Score = 295 bits (326), Expect = 5e-76 Identities = 163/163 (100%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61886800 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 61886859 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61886860 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 61886919 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61886920 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 61886962 Score = 161 bits (178), Expect = 8e-36 Identities = 92/94 (98%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61887042 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 61887101 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||||||||||||||| ||||| Sbjct 61887102 ACATCTCATTTGGTTCACGGATGCCAGGCACCAG 61887135 Score = 78.8 bits (86), Expect = 7e-11 Identities = 61/70 (87%), Gaps = 2/70 (3%) Strand=Plus/Plus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGG-AGGTTTGAA 5017 |||| ||||||||||||||||||||| |||||||||||||||||||||| | | || || Sbjct 61886386 AAGAAGCAATGAATACGATGATGTGCAGCCGATGCCAGGGAAAGCATAGGTATGATTTAA 61886445 Query 5018 AT-GGACCGG 5026 || |||| || Sbjct 61886446 ATAGGACAGG 61886455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40211185523968