Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20mutus_20[refseq_20GCF_5F000298355.1_202013-01-09] 41,192 sequences; 2,645,161,911 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq827 87.8 1e-14 seq3288 77.0 2e-11 >seq827 Length=140081 Score = 87.8 bits (96), Expect = 1e-14 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||| || ||||||||||||| || |||| |||||||||||| Sbjct 66892 CTGCCCAGGCATAGTTCACCGTCCTTCGGGTCCTAACATGTGTGCTCATGCTCCACCTCC 66833 Query 897 CCGACGCGGTCGG 909 ||| | |||| || Sbjct 66832 CCGGCACGGTGGG 66820 >seq3288 Length=111447 Score = 77.0 bits (84), Expect = 2e-11 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 || ||||| |||||||||||||||||||||||||||| | |||| | || ||||||||| Sbjct 20009 CTTCCCAGACATAGTTCACCATCTTTCGGGTCCTAACACTTGCGACCATGTTCCACCTCC 19950 Query 897 CC 898 || Sbjct 19949 CC 19948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2859584753616