Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bos_20taurus_20[refseq_20GCF_5F000003055.6_202014-11-25] 3,144 sequences; 2,670,139,648 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq5 295 5e-76 >seq5 Length=121191424 Score = 295 bits (326), Expect = 5e-76 Identities = 163/163 (100%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 57769026 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 57769085 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 57769086 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 57769145 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 57769146 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 57769188 Score = 161 bits (178), Expect = 8e-36 Identities = 92/94 (98%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 57769268 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 57769327 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||||||||||||||| ||||| Sbjct 57769328 ACATCTCATTTGGTTCACGGATGCCAGGCACCAG 57769361 Score = 78.8 bits (86), Expect = 7e-11 Identities = 61/70 (87%), Gaps = 2/70 (3%) Strand=Plus/Plus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGG-AGGTTTGAA 5017 |||| ||||||||||||||||||||| |||||||||||||||||||||| | | || || Sbjct 57768612 AAGAAGCAATGAATACGATGATGTGCAGCCGATGCCAGGGAAAGCATAGGTATGATTTAA 57768671 Query 5018 AT-GGACCGG 5026 || |||| || Sbjct 57768672 ATAGGACAGG 57768681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40209777729856