Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_001461.1
Length=12573
Score E
Sequences producing significant alignments: (Bits) Value
seq27 437 7e-119
seq39 360 2e-95
seq10 264 9e-67
>seq27
Length=45876710
Score = 437 bits (484), Expect = 7e-119
Identities = 260/272 (96%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5936606 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5936665
Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 5936666 GCCAGATACTGTGCTGAGTGTAATAAACTGCATCCTGCTGAGGAAGGAGACTTTTGGGCA 5936725
Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173
||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 5936726 GAGTCAAGCATGTTGGGCCTCAAGATCACCTATTTTGCACTGATGGATGGAAAGGTGTAT 5936785
Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5936786 GATATCACAGAATGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5936845
Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265
|| | |||||||||||||||||| ||||| ||
Sbjct 5936846 CCCTATCACATCTCATTTGGTTCTCGGATTCC 5936877
>seq39
Length=123869142
Score = 360 bits (398), Expect = 2e-95
Identities = 244/272 (90%), Gaps = 5/272 (2%)
Strand=Plus/Plus
Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053
||||||||||||| ||| |||| |||||| ||| ||||||| ||||||||||||||||||
Sbjct 31774876 ATGTGCAGCCGATACCAAGGAATGCATAGAAGGATTGAAATTGACCGGGAACCTAAGAGT 31774935
Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113
|||||||||||||||||||||||| | ||||||| |||||||||||| ||||||||||||
Sbjct 31774936 GCCAGATACTGTGCTGAGTGTAATGGACTGCATCTTGCTGAGGAAGGAGACTTTTGGGCA 31774995
Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173
||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||
Sbjct 31774996 GAGTCAAGCATGTTGGGCCTCAAGATCACCTATTTTGCACTGATGGATGGAAAGGTGT-- 31775053
Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233
|||||||||| |||||||||||||||| ||||||||| |||||||||||| |||||||
Sbjct 31775054 -ATATCACAGAATGGGCTGGATGCCAGCATGTGGGAATTTCCCCAGATACC--CAGAGTC 31775110
Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265
|| | ||||||||| |||||||| | ||| ||
Sbjct 31775111 CCCTATCACATCTCCTTTGGTTCTCAGATTCC 31775142
Score = 80.6 bits (88), Expect = 2e-11
Identities = 52/57 (91%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAG 5050
||||||||||||| ||| |||| |||||||||||||||||| |||| ||||||||||
Sbjct 31774742 ATGTGCAGCCGATACCAAGGAATGCATAGGAGGTTTGAAATTGACCAGGAACCTAAG 31774798
>seq10
Length=69331447
Score = 264 bits (292), Expect = 9e-67
Identities = 157/164 (96%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208038 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAA 207979
Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 207978 ACTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGAT 207919
Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183
|||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 207918 CACCTATTTTGCACTGATGGATGGAAAGGTGTATGATATCACAG 207875
Score = 129 bits (142), Expect = 5e-26
Identities = 79/84 (94%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 5182 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCA 5241
||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 207794 AGAATGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATCA 207735
Query 5242 CATCTCATTTGGTTCACGGATGCC 5265
||||||||||||||| ||||| ||
Sbjct 207734 CATCTCATTTGGTTCTCGGATTCC 207711
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40116925047024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |