Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq27 437 7e-119 seq39 360 2e-95 seq10 264 9e-67 >seq27 Length=45876710 Score = 437 bits (484), Expect = 7e-119 Identities = 260/272 (96%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5936606 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5936665 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 5936666 GCCAGATACTGTGCTGAGTGTAATAAACTGCATCCTGCTGAGGAAGGAGACTTTTGGGCA 5936725 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| Sbjct 5936726 GAGTCAAGCATGTTGGGCCTCAAGATCACCTATTTTGCACTGATGGATGGAAAGGTGTAT 5936785 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5936786 GATATCACAGAATGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5936845 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || | |||||||||||||||||| ||||| || Sbjct 5936846 CCCTATCACATCTCATTTGGTTCTCGGATTCC 5936877 >seq39 Length=123869142 Score = 360 bits (398), Expect = 2e-95 Identities = 244/272 (90%), Gaps = 5/272 (2%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||||||||||| ||| |||| |||||| ||| ||||||| |||||||||||||||||| Sbjct 31774876 ATGTGCAGCCGATACCAAGGAATGCATAGAAGGATTGAAATTGACCGGGAACCTAAGAGT 31774935 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 |||||||||||||||||||||||| | ||||||| |||||||||||| |||||||||||| Sbjct 31774936 GCCAGATACTGTGCTGAGTGTAATGGACTGCATCTTGCTGAGGAAGGAGACTTTTGGGCA 31774995 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||| Sbjct 31774996 GAGTCAAGCATGTTGGGCCTCAAGATCACCTATTTTGCACTGATGGATGGAAAGGTGT-- 31775053 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 |||||||||| |||||||||||||||| ||||||||| |||||||||||| ||||||| Sbjct 31775054 -ATATCACAGAATGGGCTGGATGCCAGCATGTGGGAATTTCCCCAGATACC--CAGAGTC 31775110 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || | ||||||||| |||||||| | ||| || Sbjct 31775111 CCCTATCACATCTCCTTTGGTTCTCAGATTCC 31775142 Score = 80.6 bits (88), Expect = 2e-11 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAG 5050 ||||||||||||| ||| |||| |||||||||||||||||| |||| |||||||||| Sbjct 31774742 ATGTGCAGCCGATACCAAGGAATGCATAGGAGGTTTGAAATTGACCAGGAACCTAAG 31774798 >seq10 Length=69331447 Score = 264 bits (292), Expect = 9e-67 Identities = 157/164 (96%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 208038 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAA 207979 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || Sbjct 207978 ACTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGAT 207919 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 |||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 207918 CACCTATTTTGCACTGATGGATGGAAAGGTGTATGATATCACAG 207875 Score = 129 bits (142), Expect = 5e-26 Identities = 79/84 (94%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 5182 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCA 5241 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 207794 AGAATGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATCA 207735 Query 5242 CATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||||| ||||| || Sbjct 207734 CATCTCATTTGGTTCTCGGATTCC 207711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40116925047024