Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11-
02] 3,268 sequences; 2,410,976,875 total letters
Query= NC_003678.1
Length=12602
Score E
Sequences producing significant alignments: (Bits) Value
seq27 471 3e-129
seq39 387 1e-103
seq10 269 2e-68
>seq27
Length=45876710
Score = 471 bits (522), Expect = 3e-129
Identities = 285/301 (95%), Gaps = 0/301 (0%)
Strand=Plus/Plus
Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018
|||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 5936586 AAGAAGCAATGAATACTATGATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5936645
Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 5936646 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAAACTGCATCCTGCTG 5936705
Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5138
||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 5936706 AGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATCACCTATTTTGCAC 5936765
Query 5139 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5198
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 5936766 TGATGGATGGAAAGGTGTATGATATCACAGAATGGGCTGGATGCCAGCGTGTGGGAATCT 5936825
Query 5199 CCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCA 5258
|||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||| ||||
Sbjct 5936826 CCCCAGATACCCACAGAGTCCCCTATCACATCTCATTTGGTTCTCGGATTCCAGGCACCA 5936885
Query 5259 G 5259
|
Sbjct 5936886 G 5936886
>seq39
Length=123869142
Score = 387 bits (428), Expect = 1e-103
Identities = 269/303 (89%), Gaps = 8/303 (3%)
Strand=Plus/Plus
Query 4957 AGAAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGA 5016
|||||| ||||||||| ||||||||| ||||| ||| |||| |||||| ||| ||||
Sbjct 31774857 AGAAGA---AATGAATACTGTGATGTGCAGCCGATACCAAGGAATGCATAGAAGGATTGA 31774913
Query 5017 AATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGC 5076
||| |||||||||||||||||||||||||||||||||||||||||| | ||||||| |||
Sbjct 31774914 AATTGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATGGACTGCATCTTGC 31774973
Query 5077 TGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGC 5136
||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 31774974 TGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATCACCTATTTTGC 31775033
Query 5137 GCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAAT 5196
||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||
Sbjct 31775034 ACTGATGGATGGAAAGGTGT---ATATCACAGAATGGGCTGGATGCCAGCATGTGGGAAT 31775090
Query 5197 CTCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTAC 5256
|||||||||||| ||||||||| ||||||||| | |||||||| | ||| ||||| ||
Sbjct 31775091 TTCCCCAGATACC--CAGAGTCCCCTATCACATCTCCTTTGGTTCTCAGATTCCAGGCAC 31775148
Query 5257 CAG 5259
|||
Sbjct 31775149 CAG 31775151
Score = 93.3 bits (102), Expect = 3e-15
Identities = 68/79 (86%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 4957 AGAAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGA 5016
|||||| ||||||||| ||||||||| ||||| ||| |||| |||||||||||||||
Sbjct 31774720 AGAAGAAATAATGAATACTGTGATGTGCAGCCGATACCAAGGAATGCATAGGAGGTTTGA 31774779
Query 5017 AATGGACCGGGAACCTAAG 5035
||| |||| ||||||||||
Sbjct 31774780 AATTGACCAGGAACCTAAG 31774798
>seq10
Length=69331447
Score = 269 bits (298), Expect = 2e-68
Identities = 158/164 (96%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208038 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAA 207979
Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 207978 ACTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGAT 207919
Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168
|||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 207918 CACCTATTTTGCACTGATGGATGGAAAGGTGTATGATATCACAG 207875
Score = 138 bits (152), Expect = 9e-29
Identities = 99/113 (88%), Gaps = 1/113 (1%)
Strand=Plus/Minus
Query 5167 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCA 5226
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 207794 AGAATGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATCA 207735
Query 5227 CATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAGAGAGAGGAATGTG 5279
|||| |||||||||| ||||| ||||| || || | | | ||||| |||||
Sbjct 207734 CATCTCATTTGGTTCTCGGATTCCAGGCACTAGTGGGC-GGCAGAGGTATGTG 207683
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40209721635232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |