Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Canis_20lupus_20familiaris_20[refseq_20GCF_5F000002285.3_202011-11- 02] 3,268 sequences; 2,410,976,875 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq27 471 3e-129 seq39 387 1e-103 seq10 269 2e-68 >seq27 Length=45876710 Score = 471 bits (522), Expect = 3e-129 Identities = 285/301 (95%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 4959 AAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5018 |||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 5936586 AAGAAGCAATGAATACTATGATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAA 5936645 Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 5936646 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAAACTGCATCCTGCTG 5936705 Query 5079 AGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGC 5138 ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| | Sbjct 5936706 AGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATCACCTATTTTGCAC 5936765 Query 5139 TGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCT 5198 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 5936766 TGATGGATGGAAAGGTGTATGATATCACAGAATGGGCTGGATGCCAGCGTGTGGGAATCT 5936825 Query 5199 CCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCA 5258 |||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||| |||| Sbjct 5936826 CCCCAGATACCCACAGAGTCCCCTATCACATCTCATTTGGTTCTCGGATTCCAGGCACCA 5936885 Query 5259 G 5259 | Sbjct 5936886 G 5936886 >seq39 Length=123869142 Score = 387 bits (428), Expect = 1e-103 Identities = 269/303 (89%), Gaps = 8/303 (3%) Strand=Plus/Plus Query 4957 AGAAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGA 5016 |||||| ||||||||| ||||||||| ||||| ||| |||| |||||| ||| |||| Sbjct 31774857 AGAAGA---AATGAATACTGTGATGTGCAGCCGATACCAAGGAATGCATAGAAGGATTGA 31774913 Query 5017 AATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGC 5076 ||| |||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| Sbjct 31774914 AATTGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATGGACTGCATCTTGC 31774973 Query 5077 TGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGC 5136 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 31774974 TGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATCACCTATTTTGC 31775033 Query 5137 GCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAAT 5196 ||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||| Sbjct 31775034 ACTGATGGATGGAAAGGTGT---ATATCACAGAATGGGCTGGATGCCAGCATGTGGGAAT 31775090 Query 5197 CTCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTAC 5256 |||||||||||| ||||||||| ||||||||| | |||||||| | ||| ||||| || Sbjct 31775091 TTCCCCAGATACC--CAGAGTCCCCTATCACATCTCCTTTGGTTCTCAGATTCCAGGCAC 31775148 Query 5257 CAG 5259 ||| Sbjct 31775149 CAG 31775151 Score = 93.3 bits (102), Expect = 3e-15 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 4957 AGAAGACTCAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGA 5016 |||||| ||||||||| ||||||||| ||||| ||| |||| ||||||||||||||| Sbjct 31774720 AGAAGAAATAATGAATACTGTGATGTGCAGCCGATACCAAGGAATGCATAGGAGGTTTGA 31774779 Query 5017 AATGGACCGGGAACCTAAG 5035 ||| |||| |||||||||| Sbjct 31774780 AATTGACCAGGAACCTAAG 31774798 >seq10 Length=69331447 Score = 269 bits (298), Expect = 2e-68 Identities = 158/164 (96%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 208038 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAA 207979 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 207978 ACTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGAT 207919 Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 |||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 207918 CACCTATTTTGCACTGATGGATGGAAAGGTGTATGATATCACAG 207875 Score = 138 bits (152), Expect = 9e-29 Identities = 99/113 (88%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 5167 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCA 5226 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 207794 AGAATGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATCA 207735 Query 5227 CATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAGAGAGAGGAATGTG 5279 |||| |||||||||| ||||| ||||| || || | | | ||||| ||||| Sbjct 207734 CATCTCATTTGGTTCTCGGATTCCAGGCACTAGTGGGC-GGCAGAGGTATGTG 207683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40209721635232