Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq58026 86.0 4e-14 seq2393 80.6 2e-12 seq10704 75.2 6e-11 seq20 75.2 6e-11 >seq58026 Length=308 Score = 86.0 bits (94), Expect = 4e-14 Identities = 66/73 (90%), Gaps = 4/73 (5%) Strand=Plus/Minus Query 855 CCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCCCCGACGCGGTCGGGTCGT 914 ||||||||||||||||||| | ||||||||||||||||||||||| ||||| |||| || Sbjct 308 CCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCCCCGGCGCGG-CGGG-CG- 252 Query 915 AGTACGGGCCGGT 927 || |||||||||| Sbjct 251 AG-ACGGGCCGGT 240 >seq2393 Length=131415 Score = 80.6 bits (88), Expect = 2e-12 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||| ||||||||| | || | | |||||||||||| Sbjct 2091 CTGCCCAGGCATAGTTCACCATCTTTCAGGTCCTAACACGTGTGACCATGCTCCACCTCC 2150 Query 897 CC 898 || Sbjct 2151 CC 2152 >seq10704 Length=99533 Score = 75.2 bits (82), Expect = 6e-11 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||| |||||||||| ||||||||| | || | | | |||||||||| Sbjct 62674 CTGCCCAGGCATAGTTTACCATCTTTCAGGTCCTAACACGTGTGACCATACTCCACCTCC 62615 Query 897 CCGACGCGG 905 || ||||| Sbjct 62614 CCAGCGCGG 62606 >seq20 Length=69976673 Score = 75.2 bits (82), Expect = 6e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGC 887 ||||||||||||||||||||||||||| |||||||||| ||| |||| ||| Sbjct 6445339 CTGCCCAGGCATAGTTCACCATCTTTCCGGTCCTAACGTATGTGCTCATGC 6445389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2858159630004