Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq25752 118 6e-24 seq25556 118 6e-24 seq896 118 6e-24 seq518 118 6e-24 seq506 118 6e-24 seq461 118 6e-24 seq251 118 6e-24 seq1603 98.7 6e-18 seq1 91.5 8e-16 seq26 87.8 1e-14 seq10 80.6 2e-12 seq20 75.2 6e-11 >seq25752 Length=14080 Score = 118 bits (130), Expect = 6e-24 Identities = 84/91 (92%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 5282 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 5223 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 5222 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 5196 >seq25556 Length=14220 Score = 118 bits (130), Expect = 6e-24 Identities = 84/91 (92%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 5322 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 5381 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 5382 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 5408 >seq896 Length=22005 Score = 118 bits (130), Expect = 6e-24 Identities = 84/91 (92%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 4189 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 4130 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 4129 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 4103 >seq518 Length=18578 Score = 118 bits (130), Expect = 6e-24 Identities = 84/91 (92%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 14511 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 14452 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 14451 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 14425 >seq506 Length=19097 Score = 118 bits (130), Expect = 6e-24 Identities = 84/91 (92%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 6688 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 6747 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 6748 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 6774 >seq461 Length=21300 Score = 118 bits (130), Expect = 6e-24 Identities = 84/91 (92%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 18099 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 18040 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 18039 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 18013 >seq251 Length=33659 Score = 118 bits (130), Expect = 6e-24 Identities = 84/91 (92%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 25969 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCC 26028 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 26029 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 26055 >seq1603 Length=10953 Score = 98.7 bits (108), Expect = 6e-18 Identities = 80/91 (88%), Gaps = 6/91 (7%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||| | Sbjct 4631 CTGCCCAGGCATAGTTCAC-ATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCT-C 4688 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| |||| || | || || |||||||||| Sbjct 4689 CCGGCGCG--CGCGGCG-AG-ACGGGCCGGT 4715 >seq1 Length=157403528 Score = 91.5 bits (100), Expect = 8e-16 Identities = 69/76 (91%), Gaps = 4/76 (5%) Strand=Plus/Plus Query 852 TCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCCCCGACGCGGTCGGGT 911 |||||||||||||||||||||| | ||||||||||||||||||||||| ||||| |||| Sbjct 29850379 TCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTCCACCTCCCCGGCGCGG-CGGG- 29850436 Query 912 CGTAGTACGGGCCGGT 927 || || |||||||||| Sbjct 29850437 CG-AG-ACGGGCCGGT 29850450 >seq26 Length=51421553 Score = 87.8 bits (96), Expect = 1e-14 Identities = 77/91 (85%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||| |||||||||| ||||| |||||||| ||||||| | ||||||| |||||||||||| Sbjct 48838192 CTGTCCAGGCATAGATCACCGTCTTTCGGCTCCTAACACGTGCGCTCATGCTCCACCTCC 48838251 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 | | ||||| ||| || || |||||||||| Sbjct 48838252 CGGGCGCGG-CGG--CG-AG-ACGGGCCGGT 48838277 >seq10 Length=101087560 Score = 80.6 bits (88), Expect = 2e-12 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||| ||||||||| | || | | |||||||||||| Sbjct 77769064 CTGCCCAGGCATAGTTCACCATCTTTCAGGTCCTAACACGTGTGACCATGCTCCACCTCC 77769123 Query 897 CC 898 || Sbjct 77769124 CC 77769125 Score = 78.8 bits (86), Expect = 5e-12 Identities = 63/75 (84%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||| |||||||||| ||||||||| | || | | | |||||||||| Sbjct 101017049 CTGCCCAGGCATAGTTTACCATCTTTCAGGTCCTAACACGTGTGACCATACTCCACCTCC 101017108 Query 897 CCGACGCGGTCGGGT 911 || ||||| ||||| Sbjct 101017109 CCAGCGCGG-CGGGT 101017122 >seq20 Length=71784255 Score = 75.2 bits (82), Expect = 6e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGC 887 ||||||||||||||||||||||||||| |||||||||| ||| |||| ||| Sbjct 8003970 CTGCCCAGGCATAGTTCACCATCTTTCCGGTCCTAACGTATGTGCTCATGC 8004020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2859917683686