Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_001461.1
Length=12573
Score E
Sequences producing significant alignments: (Bits) Value
seq222550 268 7e-68
>seq222550
Length=18152
Score = 268 bits (296), Expect = 7e-68
Identities = 157/163 (96%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10408 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 10467
Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 10468 CTGCACCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 10527
Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183
||||||||||| |||||||||| || ||||||||||||||||
Sbjct 10528 ACCTACTTTGCAATGATGGATGGGAAAGTGTATGATATCACAG 10570
Score = 145 bits (160), Expect = 6e-31
Identities = 83/85 (98%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 10650 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 10709
Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265
|||||||||||||||| ||||||||
Sbjct 10710 ACATCTCATTTGGTTCTCGGATGCC 10734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 38724456153348
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |