Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_018464.1
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
seq2255124 107 1e-20
seq223402 104 1e-19
seq2710618 98.7 5e-18
seq114680 86.0 3e-14
seq1204 82.4 4e-13
>seq2255124
Length=132
Score = 107 bits (118), Expect = 1e-20
Identities = 81/90 (90%), Gaps = 4/90 (4%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
||||||||||||||||| ||||||||||||||||||| | ||||||| ||||||||||||
Sbjct 47 CTGCCCAGGCATAGTTCCCCATCTTTCGGGTCCTAACACGTGCGCTCATGCTCCACCTCC 106
Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGG 926
||| ||||| |||| || || |||||||||
Sbjct 107 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGG 132
>seq223402
Length=9244
Score = 104 bits (114), Expect = 1e-19
Identities = 68/74 (92%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||
Sbjct 8649 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCGTGTGCTCATGCTCCACCTCC 8590
Query 897 CCGACGCGGTCGGG 910
| | ||||| ||||
Sbjct 8589 CTGGCGCGG-CGGG 8577
>seq2710618
Length=200
Score = 98.7 bits (108), Expect = 5e-18
Identities = 64/69 (93%), Gaps = 1/69 (1%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| |
Sbjct 22 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCCTGCTCCACCT-C 80
Query 897 CCGACGCGG 905
||| |||||
Sbjct 81 CCGGCGCGG 89
>seq114680
Length=11566
Score = 86.0 bits (94), Expect = 3e-14
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
|||||||||||||||||||||||| ||||||||||| | ||| ||| ||||||||||||
Sbjct 11522 CTGCCCAGGCATAGTTCACCATCTCCCGGGTCCTAACACGTGCACTCATGCTCCACCTCC 11463
Query 897 CC 898
||
Sbjct 11462 CC 11461
>seq1204
Length=25311
Score = 82.4 bits (90), Expect = 4e-13
Identities = 51/55 (93%), Gaps = 0/55 (0%)
Strand=Plus/Minus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCA 891
|||| |||||||||||||||||||||||||||||||| | ||||||| |||||||
Sbjct 14561 CTGCTCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCATGCTCCA 14507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2769682748478
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |