Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq2255124 107 1e-20 seq223402 104 1e-19 seq2710618 98.7 5e-18 seq114680 86.0 3e-14 seq1204 82.4 4e-13 >seq2255124 Length=132 Score = 107 bits (118), Expect = 1e-20 Identities = 81/90 (90%), Gaps = 4/90 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||| ||||||||||||||||||| | ||||||| |||||||||||| Sbjct 47 CTGCCCAGGCATAGTTCCCCATCTTTCGGGTCCTAACACGTGCGCTCATGCTCCACCTCC 106 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGG 926 ||| ||||| |||| || || ||||||||| Sbjct 107 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGG 132 >seq223402 Length=9244 Score = 104 bits (114), Expect = 1e-19 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| Sbjct 8649 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCGTGTGCTCATGCTCCACCTCC 8590 Query 897 CCGACGCGGTCGGG 910 | | ||||| |||| Sbjct 8589 CTGGCGCGG-CGGG 8577 >seq2710618 Length=200 Score = 98.7 bits (108), Expect = 5e-18 Identities = 64/69 (93%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| | Sbjct 22 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCCTGCTCCACCT-C 80 Query 897 CCGACGCGG 905 ||| ||||| Sbjct 81 CCGGCGCGG 89 >seq114680 Length=11566 Score = 86.0 bits (94), Expect = 3e-14 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||| ||||||||||| | ||| ||| |||||||||||| Sbjct 11522 CTGCCCAGGCATAGTTCACCATCTCCCGGGTCCTAACACGTGCACTCATGCTCCACCTCC 11463 Query 897 CC 898 || Sbjct 11462 CC 11461 >seq1204 Length=25311 Score = 82.4 bits (90), Expect = 4e-13 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCA 891 |||| |||||||||||||||||||||||||||||||| | ||||||| ||||||| Sbjct 14561 CTGCTCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCATGCTCCA 14507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2769682748478