Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_001461.1
Length=12573
Score E
Sequences producing significant alignments: (Bits) Value
seq28 271 6e-69
>seq28
Length=27476936
Score = 271 bits (300), Expect = 6e-69
Identities = 158/163 (97%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14543142 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 14543083
Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 14543082 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 14543023
Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183
|||||||||||||||||||||||||| |||||||| |||||||
Sbjct 14543022 ACCTACTTTGCGCTGATGGATGGAAAAGTGTATGACATCACAG 14542980
Score = 131 bits (144), Expect = 1e-26
Identities = 80/85 (94%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct 14542900 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACTCACAGAGTCCCCTATC 14542841
Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265
|||||||||||||||| ||||| ||
Sbjct 14542840 ACATCTCATTTGGTTCTCGGATTCC 14542816
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40117006738116
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |