Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_018464.1
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
seq23 87.8 1e-14
seq1 87.8 1e-14
seq32 78.8 5e-12
>seq23
Length=29576853
Score = 87.8 bits (96), Expect = 1e-14
Identities = 57/63 (90%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
||||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||
Sbjct 550605 CTGCCCAGGCATAGTTCACCATCTTTCAGGTCCTAAGACGTGCGCTCACGCTCCACCTCC 550546
Query 897 CCG 899
|||
Sbjct 550545 CCG 550543
>seq1
Length=79733107
Score = 87.8 bits (96), Expect = 1e-14
Identities = 57/63 (90%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
||||||||||||||||||||||||||| ||||||||| ||||| ||| |||| ||||| |
Sbjct 593043 CTGCCCAGGCATAGTTCACCATCTTTCAGGTCCTAACACATGCACTCATGCTTCACCTTC 593102
Query 897 CCG 899
|||
Sbjct 593103 CCG 593105
>seq32
Length=24824463
Score = 78.8 bits (86), Expect = 5e-12
Identities = 60/70 (86%), Gaps = 1/70 (1%)
Strand=Plus/Minus
Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896
|||||| |||||||||||||||||||| ||| ||||| || | |||||||||||| ||||
Sbjct 14496908 CTGCCC-GGCATAGTTCACCATCTTTCAGGTTCTAACACACGTGCTCGTGCTCCAGCTCC 14496850
Query 897 CCGACGCGGT 906
|| || |||
Sbjct 14496849 CCAGCGTGGT 14496840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2860708927326
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |