Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq23 87.8 1e-14 seq1 87.8 1e-14 seq32 78.8 5e-12 >seq23 Length=29576853 Score = 87.8 bits (96), Expect = 1e-14 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||| |||||||| | ||||||| ||||||||||| Sbjct 550605 CTGCCCAGGCATAGTTCACCATCTTTCAGGTCCTAAGACGTGCGCTCACGCTCCACCTCC 550546 Query 897 CCG 899 ||| Sbjct 550545 CCG 550543 >seq1 Length=79733107 Score = 87.8 bits (96), Expect = 1e-14 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||| ||||||||| ||||| ||| |||| ||||| | Sbjct 593043 CTGCCCAGGCATAGTTCACCATCTTTCAGGTCCTAACACATGCACTCATGCTTCACCTTC 593102 Query 897 CCG 899 ||| Sbjct 593103 CCG 593105 >seq32 Length=24824463 Score = 78.8 bits (86), Expect = 5e-12 Identities = 60/70 (86%), Gaps = 1/70 (1%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||| |||||||||||||||||||| ||| ||||| || | |||||||||||| |||| Sbjct 14496908 CTGCCC-GGCATAGTTCACCATCTTTCAGGTTCTAACACACGTGCTCGTGCTCCAGCTCC 14496850 Query 897 CCGACGCGGT 906 || || ||| Sbjct 14496849 CCAGCGTGGT 14496840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860708927326