Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq34 259 4e-65 >seq34 Length=16008657 Score = 259 bits (286), Expect = 4e-65 Identities = 155/163 (95%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 3353978 AGGAGGTTTGAAATGGACCGGGAACCTAAAAGTGCCAGATACTGTGCTGAGTGCAATAGG 3354037 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct 3354038 CTGCATCCTGCAGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 3354097 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 3354098 ACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 3354140 Score = 127 bits (140), Expect = 2e-25 Identities = 79/85 (93%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | || Sbjct 3354217 CAGAGTGGGCTGGATGCCAACGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCCTATC 3354276 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 ||||||| |||||||| ||||| || Sbjct 3354277 ACATCTCCTTTGGTTCTCGGATCCC 3354301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40117479282720